Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05395

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,041,852	-		LU632_RS05390	0.57	-2.2
1,041,852	-		LU632_RS05390	0.57	-1.3
1,041,906	-		LU632_RS05390	0.60	-1.9
1,041,914	+		LU632_RS05390	0.60	-1.5
1,041,944	+		LU632_RS05390	0.61	-0.5
1,042,118	+		LU632_RS05390	0.69	-0.1
1,042,176	+		LU632_RS05390	0.72	-1.4
1,042,177	-		LU632_RS05390	0.72	-2.7
1,042,177	-		LU632_RS05390	0.72	+2.5
1,042,228	+		LU632_RS05390	0.75	+0.9
1,042,228	+		LU632_RS05390	0.75	-1.9
1,042,337	-		LU632_RS05390	0.80	-1.7
1,042,343	+		LU632_RS05390	0.80	-2.9
1,042,343	+		LU632_RS05390	0.80	-2.2
1,042,343	+		LU632_RS05390	0.80	-2.2
1,042,344	-		LU632_RS05390	0.80	-4.6
1,042,369	-		LU632_RS05390	0.81	-0.7
1,042,369	-		LU632_RS05390	0.81	-0.4
1,042,505	+		LU632_RS05390	0.88	+0.9
1,042,506	-		LU632_RS05390	0.88	-2.0
1,042,514	+		LU632_RS05390	0.88	-3.2
1,042,514	+		LU632_RS05390	0.88	-1.9
1,042,514	+		LU632_RS05390	0.88	-0.9
1,042,515	-		LU632_RS05390	0.88	-3.0
1,042,515	-		LU632_RS05390	0.88	-2.7
1,042,562	+				-0.1
1,042,562	+				-2.8
1,042,583	-				-0.7
1,042,714	-				-1.4
1,042,714	-				-2.3
1,042,755	+				-3.0
1,042,756	-				+0.9
1,042,757	+				+0.1
1,042,757	+				-0.7
1,042,757	+				-2.2
1,042,758	-				-1.1
1,042,758	-				-2.0
1,042,758	-				-3.6
1,042,758	-				-4.5
1,042,770	+				+1.4
1,042,849	+				+4.0
1,042,849	+				+3.0
1,042,850	-				+2.6
1,042,872	+		LU632_RS05395	0.11	-0.3
1,042,912	-		LU632_RS05395	0.17	+4.4
1,042,965	+		LU632_RS05395	0.26	+4.3
1,042,966	-		LU632_RS05395	0.26	+2.1
1,043,041	-		LU632_RS05395	0.38	+3.4
1,043,171	-		LU632_RS05395	0.59	+0.1
1,043,328	+		LU632_RS05395	0.85	+3.7
1,043,331	+		LU632_RS05395	0.86	+1.7
1,043,331	+		LU632_RS05395	0.86	+4.5
1,043,371	+				+4.2
1,043,371	+				+3.3
1,043,375	-				-1.1
1,043,496	+				+3.2
1,043,497	-				+0.8
1,043,503	+				+0.7
1,043,504	-				+0.4
1,043,728	+				-0.7
1,043,834	+		LU632_RS05400	0.11	+0.2
1,043,834	+		LU632_RS05400	0.11	+2.1
1,043,838	+		LU632_RS05400	0.11	-1.7
1,043,874	+		LU632_RS05400	0.14	+2.7
1,043,943	+		LU632_RS05400	0.20	+3.2
1,043,944	-		LU632_RS05400	0.20	+2.2
1,043,944	-		LU632_RS05400	0.20	+3.1
1,044,070	-		LU632_RS05400	0.30	+1.6
1,044,113	-		LU632_RS05400	0.33	-1.1
1,044,143	-		LU632_RS05400	0.36	-1.6