Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05390

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
1,039,691	-		LU632_RS05385	0.66	+0.8
1,040,078	-				+0.2
1,040,202	+				+1.5
1,040,203	-				-1.7
1,040,203	-				-2.4
1,040,203	-				+2.9
1,040,203	-				+0.6
1,040,204	+				+2.5
1,040,218	-				-0.5
1,040,333	+				-1.5
1,040,395	-				-1.2
1,040,430	-				-2.2
1,040,430	-				-0.1
1,040,456	+				-0.7
1,040,456	-				-1.2
1,040,457	-				-1.0
1,040,457	-				-0.4
1,040,459	-				-1.4
1,040,459	-				-1.7
1,040,490	+				+0.4
1,040,501	-				+0.9
1,040,635	+				-0.7
1,040,639	+				-2.8
1,040,639	+				-1.1
1,040,696	+				-3.5
1,040,718	-				-1.1
1,040,795	+				-3.7
1,040,948	+		LU632_RS05390	0.15	-2.7
1,040,957	+		LU632_RS05390	0.15	-1.1
1,040,958	-		LU632_RS05390	0.15	-4.2
1,040,961	+		LU632_RS05390	0.16	+0.2
1,040,962	-		LU632_RS05390	0.16	-2.5
1,040,962	-		LU632_RS05390	0.16	-1.7
1,040,962	-		LU632_RS05390	0.16	-3.2
1,040,975	+		LU632_RS05390	0.16	-1.5
1,040,979	-		LU632_RS05390	0.16	-3.2
1,041,083	+		LU632_RS05390	0.21	-2.1
1,041,083	+		LU632_RS05390	0.21	-1.0
1,041,083	+		LU632_RS05390	0.21	-1.7
1,041,089	+		LU632_RS05390	0.21	+0.1
1,041,089	+		LU632_RS05390	0.21	-3.1
1,041,115	+		LU632_RS05390	0.23	-3.7
1,041,186	+		LU632_RS05390	0.26	-0.7
1,041,197	-		LU632_RS05390	0.27	-0.1
1,041,331	-		LU632_RS05390	0.33	-0.7
1,041,399	+		LU632_RS05390	0.36	-0.5
1,041,400	-		LU632_RS05390	0.36	-2.6
1,041,400	-		LU632_RS05390	0.36	-1.4
1,041,400	-		LU632_RS05390	0.36	-0.1
1,041,400	-		LU632_RS05390	0.36	-1.1
1,041,404	-		LU632_RS05390	0.36	+0.9
1,041,486	+		LU632_RS05390	0.40	-1.4
1,041,487	-		LU632_RS05390	0.40	-0.8
1,041,546	+		LU632_RS05390	0.43	+2.5
1,041,546	+		LU632_RS05390	0.43	-0.6
1,041,547	-		LU632_RS05390	0.43	+0.4
1,041,571	+		LU632_RS05390	0.44	-1.5
1,041,725	+		LU632_RS05390	0.51	-2.3
1,041,725	+		LU632_RS05390	0.51	-0.1
1,041,765	-		LU632_RS05390	0.53	-2.1
1,041,852	-		LU632_RS05390	0.57	-2.2
1,041,852	-		LU632_RS05390	0.57	-1.3
1,041,906	-		LU632_RS05390	0.60	-1.9
1,041,914	+		LU632_RS05390	0.60	-1.5
1,041,944	+		LU632_RS05390	0.61	-0.5
1,042,118	+		LU632_RS05390	0.69	-0.1
1,042,176	+		LU632_RS05390	0.72	-1.4
1,042,177	-		LU632_RS05390	0.72	-2.7
1,042,177	-		LU632_RS05390	0.72	+2.5
1,042,228	+		LU632_RS05390	0.75	+0.9
1,042,228	+		LU632_RS05390	0.75	-1.9
1,042,337	-		LU632_RS05390	0.80	-1.7
1,042,343	+		LU632_RS05390	0.80	-2.9
1,042,343	+		LU632_RS05390	0.80	-2.2
1,042,343	+		LU632_RS05390	0.80	-2.2
1,042,344	-		LU632_RS05390	0.80	-4.6
1,042,369	-		LU632_RS05390	0.81	-0.7
1,042,369	-		LU632_RS05390	0.81	-0.4
1,042,505	+		LU632_RS05390	0.88	+0.9
1,042,506	-		LU632_RS05390	0.88	-2.0
1,042,514	+		LU632_RS05390	0.88	-3.2
1,042,514	+		LU632_RS05390	0.88	-1.9
1,042,514	+		LU632_RS05390	0.88	-0.9
1,042,515	-		LU632_RS05390	0.88	-3.0
1,042,515	-		LU632_RS05390	0.88	-2.7
1,042,562	+				-0.1
1,042,562	+				-2.8
1,042,583	-				-0.7
1,042,714	-				-1.4
1,042,714	-				-2.3
1,042,755	+				-3.0
1,042,756	-				+0.9
1,042,757	+				+0.1
1,042,757	+				-0.7
1,042,757	+				-2.2
1,042,758	-				-1.1
1,042,758	-				-2.0
1,042,758	-				-3.6
1,042,758	-				-4.5
1,042,770	+				+1.4
1,042,849	+				+4.0
1,042,849	+				+3.0
1,042,850	-				+2.6
1,042,872	+		LU632_RS05395	0.11	-0.3
1,042,912	-		LU632_RS05395	0.17	+4.4
1,042,965	+		LU632_RS05395	0.26	+4.3
1,042,966	-		LU632_RS05395	0.26	+2.1
1,043,041	-		LU632_RS05395	0.38	+3.4
1,043,171	-		LU632_RS05395	0.59	+0.1
1,043,328	+		LU632_RS05395	0.85	+3.7
1,043,331	+		LU632_RS05395	0.86	+1.7
1,043,331	+		LU632_RS05395	0.86	+4.5
1,043,371	+				+4.2
1,043,371	+				+3.3
1,043,375	-				-1.1
1,043,496	+				+3.2
1,043,497	-				+0.8
1,043,503	+				+0.7
1,043,504	-				+0.4
1,043,728	+				-0.7