Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05110 and LU632_RS05115 are separated by 164 nucleotides LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides LU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides LU632_RS05125 and LU632_RS05130 are separated by 12 nucleotides LU632_RS05130 and LU632_RS05135 overlap by 4 nucleotides
LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958
_RS05110
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131
_RS05125
LU632_RS05130: LU632_RS05130 - TIGR03750 family conjugal transfer protein, at 995,144 to 995,500
_RS05130
LU632_RS05135: LU632_RS05135 - TIGR03746 family integrating conjugative element protein, at 995,497 to 996,168
_RS05135
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.873 kb on + strand, within LU632_RS05110 at 994.122 kb on + strand at 994.122 kb on + strand at 994.123 kb on - strand at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand at 994.503 kb on - strand, within LU632_RS05120 at 994.685 kb on + strand, within LU632_RS05120 at 994.716 kb on + strand at 994.716 kb on + strand at 994.717 kb on - strand at 994.750 kb on + strand at 994.751 kb on - strand at 994.769 kb on - strand at 994.978 kb on + strand, within LU632_RS05125 at 995.093 kb on - strand, within LU632_RS05125 at 995.464 kb on + strand, within LU632_RS05130 at 995.497 kb on - strand at 995.633 kb on - strand, within LU632_RS05135 at 995.636 kb on - strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.761 kb on + strand, within LU632_RS05135 at 995.914 kb on + strand, within LU632_RS05135 at 995.915 kb on - strand, within LU632_RS05135 at 995.934 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 993,817 - LU632_RS05110 0.69 -2.0 993,817 - LU632_RS05110 0.69 -1.0 993,817 - LU632_RS05110 0.69 +1.0 993,817 - LU632_RS05110 0.69 -3.3 993,817 - LU632_RS05110 0.69 -1.0 993,817 - LU632_RS05110 0.69 -0.5 993,873 + LU632_RS05110 0.82 -1.1 994,122 + -1.4 994,122 + +0.4 994,123 - +2.2 994,435 + LU632_RS05115 0.90 -3.9 994,435 + LU632_RS05115 0.90 +1.2 994,436 - -2.0 994,436 - -1.0 994,450 + -0.1 994,503 - LU632_RS05120 0.14 -0.4 994,685 + LU632_RS05120 0.88 -1.6 994,716 + +1.4 994,716 + -1.3 994,717 - +0.8 994,750 + +0.8 994,751 - -1.6 994,769 - +1.0 994,978 + LU632_RS05125 0.60 +1.8 995,093 - LU632_RS05125 0.90 -0.5 995,464 + LU632_RS05130 0.90 +2.1 995,497 - -0.2 995,633 - LU632_RS05135 0.20 -2.0 995,636 - LU632_RS05135 0.21 +0.5 995,698 + LU632_RS05135 0.30 -0.3 995,698 + LU632_RS05135 0.30 +0.5 995,714 - LU632_RS05135 0.32 -1.3 995,714 - LU632_RS05135 0.32 -0.6 995,761 + LU632_RS05135 0.39 +0.7 995,914 + LU632_RS05135 0.62 -2.0 995,915 - LU632_RS05135 0.62 -2.2 995,934 + LU632_RS05135 0.65 +1.0 995,986 + LU632_RS05135 0.73 -1.3 995,986 + LU632_RS05135 0.73 +1.0 995,986 + LU632_RS05135 0.73 -0.0 995,987 - LU632_RS05135 0.73 -0.4 995,987 - LU632_RS05135 0.73 +2.0
Or see this region's nucleotide sequence