Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05050

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05040 and LU632_RS05045 overlap by 4 nucleotidesLU632_RS05045 and LU632_RS05050 are separated by 127 nucleotidesLU632_RS05050 and LU632_RS05055 are separated by 304 nucleotidesLU632_RS05055 and LU632_RS05060 overlap by 4 nucleotides LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281 _RS05040 LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660 _RS05045 LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585 _RS05050 LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291 _RS05055 LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345 _RS05060 Position (kb) 981 982 983 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 980.792 kb on + strand, within LU632_RS05040at 980.823 kb on + strand, within LU632_RS05040at 980.823 kb on + strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.824 kb on - strand, within LU632_RS05040at 980.825 kb on + strand, within LU632_RS05040at 980.825 kb on + strand, within LU632_RS05040at 981.051 kb on + strandat 981.051 kb on + strandat 981.052 kb on - strandat 981.052 kb on - strandat 981.053 kb on + strandat 981.054 kb on - strandat 981.054 kb on - strandat 981.080 kb on + strandat 981.081 kb on - strandat 981.118 kb on - strandat 981.183 kb on + strandat 981.183 kb on + strandat 981.184 kb on - strandat 981.184 kb on - strandat 981.189 kb on - strandat 981.525 kb on + strand, within LU632_RS05045at 981.525 kb on + strand, within LU632_RS05045at 981.525 kb on + strand, within LU632_RS05045at 981.526 kb on - strand, within LU632_RS05045at 981.574 kb on + strand, within LU632_RS05045at 981.575 kb on - strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.592 kb on + strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.593 kb on - strand, within LU632_RS05045at 981.594 kb on + strand, within LU632_RS05045at 981.594 kb on + strand, within LU632_RS05045at 981.595 kb on - strand, within LU632_RS05045at 981.649 kb on - strandat 981.649 kb on - strandat 981.649 kb on - strandat 981.650 kb on + strandat 981.650 kb on + strandat 981.651 kb on - strandat 981.651 kb on - strandat 981.651 kb on - strandat 981.659 kb on - strandat 981.796 kb on - strandat 981.807 kb on + strandat 981.807 kb on + strandat 981.808 kb on - strandat 981.968 kb on - strandat 982.003 kb on + strandat 982.318 kb on + strand, within LU632_RS05050at 983.099 kb on - strand, within LU632_RS05050at 983.184 kb on + strand, within LU632_RS05050at 983.378 kb on + strand, within LU632_RS05050at 983.639 kb on + strand, within LU632_RS05050at 983.734 kb on + strand, within LU632_RS05050at 983.878 kb on - strand, within LU632_RS05050at 983.983 kb on - strand, within LU632_RS05050at 984.127 kb on - strand, within LU632_RS05050at 984.127 kb on - strand, within LU632_RS05050at 984.341 kb on + strand, within LU632_RS05050at 984.344 kb on - strand, within LU632_RS05050at 984.920 kb on - strand, within LU632_RS05050at 985.046 kb on - strand, within LU632_RS05050at 985.055 kb on - strand, within LU632_RS05050at 985.174 kb on + strand, within LU632_RS05050at 985.291 kb on - strandat 985.504 kb on + strandat 985.546 kb on - strandat 985.546 kb on - strandat 985.574 kb on + strandat 985.575 kb on - strandat 985.684 kb on + strandat 985.705 kb on + strandat 985.705 kb on + strandat 985.706 kb on - strandat 985.707 kb on + strandat 985.729 kb on - strandat 985.729 kb on - strandat 985.729 kb on - strandat 985.740 kb on + strandat 985.741 kb on - strandat 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.957 kb on + strand, within LU632_RS05055at 985.958 kb on - strand, within LU632_RS05055at 985.958 kb on - strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.959 kb on + strand, within LU632_RS05055at 985.960 kb on - strand, within LU632_RS05055at 985.962 kb on - strand, within LU632_RS05055at 986.161 kb on + strand, within LU632_RS05055at 986.229 kb on + strand, within LU632_RS05055at 986.230 kb on - strand, within LU632_RS05055at 986.431 kb on + strand, within LU632_RS05060at 986.432 kb on - strand, within LU632_RS05060at 986.432 kb on - strand, within LU632_RS05060at 986.502 kb on + strand, within LU632_RS05060at 986.519 kb on - strand, within LU632_RS05060at 986.543 kb on + strand, within LU632_RS05060at 986.543 kb on + strand, within LU632_RS05060

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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980,792 + LU632_RS05040 0.83 +0.3
980,823 + LU632_RS05040 0.84 -0.8
980,823 + LU632_RS05040 0.84 -0.0
980,824 - LU632_RS05040 0.84 +0.5
980,824 - LU632_RS05040 0.84 +1.8
980,824 - LU632_RS05040 0.84 +0.0
980,825 + LU632_RS05040 0.84 -0.9
980,825 + LU632_RS05040 0.84 -0.1
981,051 + +1.0
981,051 + -1.3
981,052 - +0.6
981,052 - +0.9
981,053 + +1.2
981,054 - -1.3
981,054 - +0.4
981,080 + -0.0
981,081 - -0.0
981,118 - +0.9
981,183 + +1.0
981,183 + -0.4
981,184 - -0.0
981,184 - -0.6
981,189 - +3.0
981,525 + LU632_RS05045 0.64 +1.0
981,525 + LU632_RS05045 0.64 -2.8
981,525 + LU632_RS05045 0.64 -0.9
981,526 - LU632_RS05045 0.65 +2.6
981,574 + LU632_RS05045 0.77 -1.6
981,575 - LU632_RS05045 0.78 +1.9
981,592 + LU632_RS05045 0.82 +0.3
981,592 + LU632_RS05045 0.82 +1.1
981,592 + LU632_RS05045 0.82 +0.3
981,593 - LU632_RS05045 0.82 -1.4
981,593 - LU632_RS05045 0.82 -2.5
981,593 - LU632_RS05045 0.82 -0.5
981,594 + LU632_RS05045 0.83 +0.6
981,594 + LU632_RS05045 0.83 -0.0
981,595 - LU632_RS05045 0.83 +3.5
981,649 - -1.7
981,649 - +0.7
981,649 - +1.8
981,650 + -1.0
981,650 + -2.1
981,651 - -2.4
981,651 - +1.4
981,651 - -1.2
981,659 - +1.0
981,796 - +1.1
981,807 + +1.2
981,807 + +1.4
981,808 - +2.6
981,968 - +1.2
982,003 + +0.8
982,318 + LU632_RS05050 0.14 -0.4
983,099 - LU632_RS05050 0.35 +1.0
983,184 + LU632_RS05050 0.37 +0.8
983,378 + LU632_RS05050 0.42 +0.7
983,639 + LU632_RS05050 0.49 +1.0
983,734 + LU632_RS05050 0.51 -0.6
983,878 - LU632_RS05050 0.55 -1.3
983,983 - LU632_RS05050 0.58 -0.8
984,127 - LU632_RS05050 0.62 +1.0
984,127 - LU632_RS05050 0.62 -1.6
984,341 + LU632_RS05050 0.67 +0.1
984,344 - LU632_RS05050 0.67 +0.5
984,920 - LU632_RS05050 0.82 +0.7
985,046 - LU632_RS05050 0.86 +1.0
985,055 - LU632_RS05050 0.86 -1.3
985,174 + LU632_RS05050 0.89 -1.0
985,291 - -1.9
985,504 + -3.1
985,546 - -1.2
985,546 - -0.6
985,574 + -1.0
985,575 - +1.5
985,684 + +0.5
985,705 + +0.4
985,705 + +0.7
985,706 - +0.1
985,707 + +1.6
985,729 - +0.5
985,729 - -2.0
985,729 - +1.8
985,740 + -1.6
985,741 - +0.8
985,957 + LU632_RS05055 0.17 +0.4
985,957 + LU632_RS05055 0.17 +3.5
985,957 + LU632_RS05055 0.17 -0.1
985,957 + LU632_RS05055 0.17 +2.4
985,958 - LU632_RS05055 0.17 -0.4
985,958 - LU632_RS05055 0.17 +0.2
985,959 + LU632_RS05055 0.17 +0.5
985,959 + LU632_RS05055 0.17 -1.0
985,959 + LU632_RS05055 0.17 -2.3
985,960 - LU632_RS05055 0.17 +3.5
985,962 - LU632_RS05055 0.18 -0.7
986,161 + LU632_RS05055 0.67 -1.3
986,229 + LU632_RS05055 0.84 -0.0
986,230 - LU632_RS05055 0.85 +0.4
986,431 + LU632_RS05060 0.14 -0.6
986,432 - LU632_RS05060 0.14 -1.1
986,432 - LU632_RS05060 0.14 +1.0
986,502 + LU632_RS05060 0.20 +1.0
986,519 - LU632_RS05060 0.22 +4.0
986,543 + LU632_RS05060 0.24 +0.7
986,543 + LU632_RS05060 0.24 -1.3

Or see this region's nucleotide sequence