Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05015 and LU632_RS05020 overlap by 4 nucleotides LU632_RS05020 and LU632_RS05025 overlap by 1 nucleotides LU632_RS05025 and LU632_RS05030 overlap by 5 nucleotides
LU632_RS05015: LU632_RS05015 - TIGR03750 family conjugal transfer protein, at 975,732 to 976,088
_RS05015
LU632_RS05020: LU632_RS05020 - TIGR03746 family integrating conjugative element protein, at 976,085 to 976,744
_RS05020
LU632_RS05025: LU632_RS05025 - TIGR03749 family integrating conjugative element protein, at 976,744 to 977,028
_RS05025
LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569
_RS05030
Position (kb) 976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 975.863 kb on + strand, within LU632_RS05015 at 975.863 kb on + strand, within LU632_RS05015 at 975.863 kb on + strand, within LU632_RS05015 at 975.864 kb on - strand, within LU632_RS05015 at 975.904 kb on + strand, within LU632_RS05015 at 975.905 kb on - strand, within LU632_RS05015 at 975.978 kb on + strand, within LU632_RS05015 at 975.979 kb on - strand, within LU632_RS05015 at 975.980 kb on + strand, within LU632_RS05015 at 976.126 kb on + strand at 976.173 kb on + strand, within LU632_RS05020 at 976.236 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.301 kb on + strand, within LU632_RS05020 at 976.302 kb on - strand, within LU632_RS05020 at 976.670 kb on + strand, within LU632_RS05020 at 976.911 kb on - strand, within LU632_RS05025 at 977.189 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.223 kb on - strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.288 kb on + strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.289 kb on - strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.302 kb on + strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.303 kb on - strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.435 kb on + strand, within LU632_RS05030 at 977.436 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.440 kb on - strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.463 kb on + strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.464 kb on - strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.467 kb on + strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.468 kb on - strand, within LU632_RS05030 at 977.500 kb on + strand, within LU632_RS05030 at 977.767 kb on + strand at 977.799 kb on + strand at 977.885 kb on - strand at 977.885 kb on - strand at 977.910 kb on + strand at 977.910 kb on + strand at 977.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 975,863 + LU632_RS05015 0.37 -0.8 975,863 + LU632_RS05015 0.37 +1.4 975,863 + LU632_RS05015 0.37 +0.7 975,864 - LU632_RS05015 0.37 -1.4 975,904 + LU632_RS05015 0.48 +0.9 975,905 - LU632_RS05015 0.48 +0.4 975,978 + LU632_RS05015 0.69 +1.7 975,979 - LU632_RS05015 0.69 +0.3 975,980 + LU632_RS05015 0.69 -0.6 976,126 + -3.2 976,173 + LU632_RS05020 0.13 -2.2 976,236 + LU632_RS05020 0.23 +2.4 976,301 + LU632_RS05020 0.33 -2.0 976,301 + LU632_RS05020 0.33 -3.1 976,302 - LU632_RS05020 0.33 +1.9 976,670 + LU632_RS05020 0.89 -0.0 976,911 - LU632_RS05025 0.59 +1.4 977,189 - LU632_RS05030 0.30 -1.0 977,223 - LU632_RS05030 0.36 +0.7 977,223 - LU632_RS05030 0.36 +1.7 977,288 + LU632_RS05030 0.48 +0.1 977,288 + LU632_RS05030 0.48 -1.0 977,289 - LU632_RS05030 0.49 -1.3 977,289 - LU632_RS05030 0.49 -1.6 977,289 - LU632_RS05030 0.49 +0.3 977,302 + LU632_RS05030 0.51 +1.5 977,302 + LU632_RS05030 0.51 +0.1 977,303 - LU632_RS05030 0.51 -1.0 977,303 - LU632_RS05030 0.51 -2.9 977,435 + LU632_RS05030 0.75 +0.5 977,435 + LU632_RS05030 0.75 +1.6 977,435 + LU632_RS05030 0.75 +0.7 977,435 + LU632_RS05030 0.75 -1.0 977,436 - LU632_RS05030 0.75 -0.6 977,440 - LU632_RS05030 0.76 -0.2 977,440 - LU632_RS05030 0.76 -0.0 977,463 + LU632_RS05030 0.80 +1.3 977,463 + LU632_RS05030 0.80 -0.3 977,464 - LU632_RS05030 0.81 -0.0 977,464 - LU632_RS05030 0.81 +0.7 977,467 + LU632_RS05030 0.81 -0.4 977,467 + LU632_RS05030 0.81 -1.0 977,467 + LU632_RS05030 0.81 +1.0 977,467 + LU632_RS05030 0.81 +1.0 977,468 - LU632_RS05030 0.81 -0.6 977,468 - LU632_RS05030 0.81 +0.5 977,468 - LU632_RS05030 0.81 -0.1 977,500 + LU632_RS05030 0.87 -0.0 977,767 + +2.9 977,799 + -1.6 977,885 - +1.5 977,885 - +1.1 977,910 + +1.2 977,910 + +0.5 977,911 - +1.9
Or see this region's nucleotide sequence