Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04870 and LU632_RS04875 are separated by 176 nucleotides LU632_RS04875 and LU632_RS04880 are separated by 13 nucleotides LU632_RS04880 and LU632_RS04885 are separated by 54 nucleotides LU632_RS04885 and LU632_RS04890 are separated by 650 nucleotides
LU632_RS04870: LU632_RS04870 - STY4528 family pathogenicity island replication protein, at 951,529 to 952,767
_RS04870
LU632_RS04875: LU632_RS04875 - TIGR03761 family integrating conjugative element protein, at 952,944 to 953,699
_RS04875
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
LU632_RS04885: LU632_RS04885 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 955,490 to 955,759
_RS04885
LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874
_RS04890
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 952.724 kb on - strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.820 kb on - strand at 952.824 kb on - strand at 952.940 kb on - strand at 952.940 kb on - strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.943 kb on + strand at 953.043 kb on - strand, within LU632_RS04875 at 953.049 kb on + strand, within LU632_RS04875 at 953.090 kb on + strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.189 kb on + strand, within LU632_RS04875 at 953.205 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.443 kb on - strand, within LU632_RS04875 at 953.476 kb on - strand, within LU632_RS04875 at 953.512 kb on - strand, within LU632_RS04875 at 953.529 kb on + strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.622 kb on - strand, within LU632_RS04875 at 953.722 kb on + strand at 953.722 kb on + strand at 953.754 kb on + strand at 953.754 kb on + strand at 953.796 kb on + strand at 953.867 kb on - strand at 953.884 kb on - strand at 953.923 kb on - strand, within LU632_RS04880 at 953.976 kb on + strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 954.062 kb on - strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.084 kb on - strand, within LU632_RS04880 at 954.159 kb on + strand, within LU632_RS04880 at 954.172 kb on + strand, within LU632_RS04880 at 954.173 kb on - strand, within LU632_RS04880 at 954.236 kb on - strand, within LU632_RS04880 at 954.541 kb on - strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.645 kb on - strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.691 kb on + strand, within LU632_RS04880 at 954.728 kb on + strand, within LU632_RS04880 at 954.844 kb on - strand, within LU632_RS04880 at 954.901 kb on + strand, within LU632_RS04880 at 954.909 kb on + strand, within LU632_RS04880 at 954.922 kb on + strand, within LU632_RS04880 at 954.976 kb on - strand, within LU632_RS04880 at 955.040 kb on + strand, within LU632_RS04880 at 955.041 kb on - strand, within LU632_RS04880 at 955.078 kb on - strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.134 kb on + strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.135 kb on - strand, within LU632_RS04880 at 955.358 kb on - strand at 955.457 kb on - strand at 955.483 kb on + strand at 955.588 kb on + strand, within LU632_RS04885 at 955.589 kb on - strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.640 kb on - strand, within LU632_RS04885 at 955.657 kb on + strand, within LU632_RS04885 at 955.771 kb on - strand at 955.783 kb on + strand at 955.784 kb on - strand at 955.784 kb on - strand at 955.798 kb on + strand at 955.995 kb on - strand at 956.108 kb on + strand at 956.108 kb on + strand at 956.207 kb on - strand at 956.219 kb on - strand at 956.219 kb on - strand at 956.265 kb on + strand at 956.319 kb on + strand at 956.378 kb on + strand at 956.379 kb on - strand at 956.383 kb on + strand at 956.390 kb on - strand at 956.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 952,724 - +2.1 952,755 + -1.7 952,755 + +1.8 952,755 + +2.2 952,755 + -2.2 952,755 + -0.6 952,756 - +3.3 952,756 - +0.3 952,756 - +0.5 952,820 - -1.1 952,824 - -0.9 952,940 - +0.4 952,940 - -1.3 952,941 + -1.0 952,941 + +1.7 952,941 + -0.6 952,941 + +0.3 952,942 - -0.0 952,942 - +0.2 952,942 - +1.1 952,942 - -0.6 952,942 - +0.3 952,942 - +0.2 952,943 + +1.8 953,043 - LU632_RS04875 0.13 -0.0 953,049 + LU632_RS04875 0.14 -3.2 953,090 + LU632_RS04875 0.19 -0.7 953,136 - LU632_RS04875 0.25 +1.0 953,136 - LU632_RS04875 0.25 -0.3 953,189 + LU632_RS04875 0.32 +1.3 953,205 - LU632_RS04875 0.35 +1.0 953,259 - LU632_RS04875 0.42 -0.5 953,259 - LU632_RS04875 0.42 +3.0 953,443 - LU632_RS04875 0.66 -0.6 953,476 - LU632_RS04875 0.70 +0.7 953,512 - LU632_RS04875 0.75 +0.6 953,529 + LU632_RS04875 0.77 -1.8 953,530 - LU632_RS04875 0.78 -1.2 953,530 - LU632_RS04875 0.78 -0.1 953,532 + LU632_RS04875 0.78 -1.8 953,532 + LU632_RS04875 0.78 +1.0 953,533 - LU632_RS04875 0.78 +0.6 953,533 - LU632_RS04875 0.78 +1.4 953,622 - LU632_RS04875 0.90 +0.8 953,722 + +0.1 953,722 + -0.0 953,754 + -0.0 953,754 + -0.0 953,796 + +1.0 953,867 - -1.0 953,884 - -1.3 953,923 - LU632_RS04880 0.12 +0.0 953,976 + LU632_RS04880 0.15 +1.5 953,977 - LU632_RS04880 0.15 -2.2 953,977 - LU632_RS04880 0.15 -0.6 953,977 - LU632_RS04880 0.15 -0.7 954,062 - LU632_RS04880 0.20 -1.2 954,083 + LU632_RS04880 0.21 +0.7 954,083 + LU632_RS04880 0.21 -2.8 954,084 - LU632_RS04880 0.22 -4.1 954,159 + LU632_RS04880 0.26 +1.1 954,172 + LU632_RS04880 0.27 +1.3 954,173 - LU632_RS04880 0.27 -0.6 954,236 - LU632_RS04880 0.30 +1.0 954,541 - LU632_RS04880 0.48 -1.8 954,644 + LU632_RS04880 0.54 +0.3 954,644 + LU632_RS04880 0.54 -1.8 954,644 + LU632_RS04880 0.54 -3.0 954,645 - LU632_RS04880 0.54 +1.3 954,646 + LU632_RS04880 0.54 +1.4 954,646 + LU632_RS04880 0.54 -0.7 954,646 + LU632_RS04880 0.54 +0.3 954,691 + LU632_RS04880 0.57 +0.6 954,728 + LU632_RS04880 0.59 -0.0 954,844 - LU632_RS04880 0.66 +1.4 954,901 + LU632_RS04880 0.69 +0.4 954,909 + LU632_RS04880 0.69 +0.1 954,922 + LU632_RS04880 0.70 +0.6 954,976 - LU632_RS04880 0.73 +1.0 955,040 + LU632_RS04880 0.77 -0.0 955,041 - LU632_RS04880 0.77 -0.0 955,078 - LU632_RS04880 0.79 +0.2 955,134 + LU632_RS04880 0.82 -1.7 955,134 + LU632_RS04880 0.82 +0.8 955,134 + LU632_RS04880 0.82 -0.6 955,135 - LU632_RS04880 0.83 -1.1 955,135 - LU632_RS04880 0.83 +1.5 955,358 - -0.3 955,457 - -0.5 955,483 + +2.2 955,588 + LU632_RS04885 0.36 -2.2 955,589 - LU632_RS04885 0.37 +1.0 955,639 + LU632_RS04885 0.55 +3.0 955,639 + LU632_RS04885 0.55 +2.0 955,639 + LU632_RS04885 0.55 -0.4 955,639 + LU632_RS04885 0.55 -0.9 955,639 + LU632_RS04885 0.55 -1.3 955,639 + LU632_RS04885 0.55 +0.7 955,640 - LU632_RS04885 0.56 -0.4 955,657 + LU632_RS04885 0.62 +2.0 955,771 - -0.9 955,783 + +1.0 955,784 - +0.1 955,784 - -1.2 955,798 + +1.0 955,995 - -0.1 956,108 + -0.5 956,108 + -0.0 956,207 - +0.5 956,219 - +0.8 956,219 - -0.2 956,265 + +1.8 956,319 + -3.3 956,378 + +1.7 956,379 - +0.1 956,383 + +1.0 956,390 - +0.7 956,424 + +1.6
Or see this region's nucleotide sequence