Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04760

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04750 and LU632_RS04755 overlap by 11 nucleotidesLU632_RS04755 and LU632_RS04760 are separated by 6 nucleotidesLU632_RS04760 and LU632_RS04765 are separated by 48 nucleotides LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996 _RS04750 LU632_RS04755: LU632_RS04755 - TraI domain-containing protein, at 934,986 to 935,738 _RS04755 LU632_RS04760: LU632_RS04760 - DNA-binding domain-containing protein, at 935,745 to 936,566 _RS04760 LU632_RS04765: LU632_RS04765 - site-specific integrase, at 936,615 to 937,624 _RS04765 Position (kb) 935 936 937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.935 kb on + strandat 934.936 kb on - strandat 935.073 kb on + strand, within LU632_RS04755at 935.073 kb on + strand, within LU632_RS04755at 935.074 kb on - strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.298 kb on + strand, within LU632_RS04755at 935.322 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.410 kb on - strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.477 kb on - strand, within LU632_RS04755at 935.606 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.661 kb on - strand, within LU632_RS04755at 935.716 kb on + strandat 935.912 kb on + strand, within LU632_RS04760at 935.912 kb on + strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760at 936.032 kb on + strand, within LU632_RS04760at 936.033 kb on - strand, within LU632_RS04760at 936.123 kb on - strand, within LU632_RS04760at 936.183 kb on - strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.290 kb on + strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.291 kb on - strand, within LU632_RS04760at 936.306 kb on - strand, within LU632_RS04760at 936.464 kb on + strand, within LU632_RS04760at 936.496 kb on - strandat 936.500 kb on + strandat 936.612 kb on - strandat 936.628 kb on + strandat 936.629 kb on - strandat 936.696 kb on + strandat 936.697 kb on + strandat 936.697 kb on - strandat 936.755 kb on + strand, within LU632_RS04765at 936.855 kb on + strand, within LU632_RS04765at 936.856 kb on - strand, within LU632_RS04765at 936.857 kb on + strand, within LU632_RS04765at 936.858 kb on - strand, within LU632_RS04765at 936.908 kb on + strand, within LU632_RS04765at 937.023 kb on - strand, within LU632_RS04765at 937.059 kb on - strand, within LU632_RS04765at 937.089 kb on - strand, within LU632_RS04765at 937.091 kb on - strand, within LU632_RS04765at 937.105 kb on - strand, within LU632_RS04765at 937.135 kb on + strand, within LU632_RS04765at 937.135 kb on + strand, within LU632_RS04765at 937.135 kb on + strand, within LU632_RS04765at 937.340 kb on - strand, within LU632_RS04765at 937.423 kb on + strand, within LU632_RS04765at 937.503 kb on + strand, within LU632_RS04765at 937.517 kb on + strand, within LU632_RS04765at 937.517 kb on + strand, within LU632_RS04765at 937.518 kb on - strand, within LU632_RS04765at 937.518 kb on - strand, within LU632_RS04765at 937.518 kb on - strand, within LU632_RS04765

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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934,847 + LU632_RS04750 0.81 +1.2
934,847 + LU632_RS04750 0.81 -1.4
934,847 + LU632_RS04750 0.81 +2.5
934,847 + LU632_RS04750 0.81 +0.7
934,848 - LU632_RS04750 0.81 -0.8
934,848 - LU632_RS04750 0.81 -0.6
934,848 - LU632_RS04750 0.81 -0.6
934,935 + -1.0
934,936 - +1.3
935,073 + LU632_RS04755 0.12 -0.4
935,073 + LU632_RS04755 0.12 +1.1
935,074 - LU632_RS04755 0.12 +0.5
935,170 + LU632_RS04755 0.24 -0.6
935,170 + LU632_RS04755 0.24 -0.1
935,171 - LU632_RS04755 0.25 +0.3
935,171 - LU632_RS04755 0.25 -0.2
935,171 - LU632_RS04755 0.25 -0.4
935,298 + LU632_RS04755 0.41 -0.0
935,322 + LU632_RS04755 0.45 +0.5
935,324 + LU632_RS04755 0.45 -0.2
935,324 + LU632_RS04755 0.45 -0.0
935,324 + LU632_RS04755 0.45 -3.4
935,324 + LU632_RS04755 0.45 +0.0
935,325 - LU632_RS04755 0.45 +1.4
935,325 - LU632_RS04755 0.45 -0.6
935,325 - LU632_RS04755 0.45 -0.4
935,325 - LU632_RS04755 0.45 -0.0
935,325 - LU632_RS04755 0.45 +0.7
935,325 - LU632_RS04755 0.45 +0.6
935,325 - LU632_RS04755 0.45 +1.4
935,410 - LU632_RS04755 0.56 -2.2
935,476 + LU632_RS04755 0.65 +0.2
935,476 + LU632_RS04755 0.65 -0.8
935,476 + LU632_RS04755 0.65 -0.3
935,476 + LU632_RS04755 0.65 +1.0
935,477 - LU632_RS04755 0.65 +0.2
935,606 + LU632_RS04755 0.82 +1.5
935,660 + LU632_RS04755 0.90 +2.0
935,660 + LU632_RS04755 0.90 +0.0
935,661 - LU632_RS04755 0.90 +0.0
935,716 + -0.0
935,912 + LU632_RS04760 0.20 +0.7
935,912 + LU632_RS04760 0.20 +1.9
935,913 - LU632_RS04760 0.20 -0.8
935,913 - LU632_RS04760 0.20 +1.4
936,032 + LU632_RS04760 0.35 +1.9
936,033 - LU632_RS04760 0.35 -0.1
936,123 - LU632_RS04760 0.46 +0.3
936,183 - LU632_RS04760 0.53 -2.4
936,290 + LU632_RS04760 0.66 +1.2
936,290 + LU632_RS04760 0.66 +0.0
936,290 + LU632_RS04760 0.66 +0.8
936,290 + LU632_RS04760 0.66 -2.2
936,290 + LU632_RS04760 0.66 -3.0
936,290 + LU632_RS04760 0.66 -0.9
936,290 + LU632_RS04760 0.66 -0.2
936,290 + LU632_RS04760 0.66 -0.4
936,290 + LU632_RS04760 0.66 -1.8
936,291 - LU632_RS04760 0.66 -1.5
936,291 - LU632_RS04760 0.66 -0.5
936,291 - LU632_RS04760 0.66 -1.6
936,306 - LU632_RS04760 0.68 -2.5
936,464 + LU632_RS04760 0.87 +0.1
936,496 - +1.1
936,500 + +1.1
936,612 - -0.9
936,628 + +1.4
936,629 - +1.9
936,696 + +0.5
936,697 + -1.5
936,697 - -0.3
936,755 + LU632_RS04765 0.14 +0.9
936,855 + LU632_RS04765 0.24 -0.6
936,856 - LU632_RS04765 0.24 -2.0
936,857 + LU632_RS04765 0.24 +0.5
936,858 - LU632_RS04765 0.24 +1.7
936,908 + LU632_RS04765 0.29 +1.0
937,023 - LU632_RS04765 0.40 +0.2
937,059 - LU632_RS04765 0.44 -0.9
937,089 - LU632_RS04765 0.47 +1.3
937,091 - LU632_RS04765 0.47 +1.3
937,105 - LU632_RS04765 0.49 +0.4
937,135 + LU632_RS04765 0.51 -0.4
937,135 + LU632_RS04765 0.51 -1.4
937,135 + LU632_RS04765 0.51 -0.3
937,340 - LU632_RS04765 0.72 -2.1
937,423 + LU632_RS04765 0.80 -2.5
937,503 + LU632_RS04765 0.88 +0.1
937,517 + LU632_RS04765 0.89 +0.3
937,517 + LU632_RS04765 0.89 -1.0
937,518 - LU632_RS04765 0.89 +1.5
937,518 - LU632_RS04765 0.89 -3.4
937,518 - LU632_RS04765 0.89 -0.7

Or see this region's nucleotide sequence