Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04715 and LU632_RS04720 are separated by 207 nucleotides LU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320
_RS04720
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
Position (kb) 926
927
928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 925.338 kb on - strand, within LU632_RS04715 at 925.391 kb on - strand, within LU632_RS04715 at 925.413 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.502 kb on + strand at 925.502 kb on - strand at 925.549 kb on - strand at 925.576 kb on + strand at 925.577 kb on - strand at 925.577 kb on - strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.629 kb on - strand at 925.631 kb on - strand at 925.631 kb on - strand at 925.684 kb on + strand at 925.684 kb on + strand at 925.685 kb on - strand at 925.685 kb on - strand at 925.762 kb on + strand, within LU632_RS04720 at 925.774 kb on + strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.886 kb on - strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.942 kb on - strand, within LU632_RS04720 at 925.943 kb on + strand, within LU632_RS04720 at 925.982 kb on - strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.212 kb on + strand, within LU632_RS04720 at 926.213 kb on - strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.230 kb on + strand, within LU632_RS04720 at 926.278 kb on + strand at 926.336 kb on - strand at 926.381 kb on + strand at 926.610 kb on + strand at 926.681 kb on + strand, within LU632_RS04725 at 926.696 kb on - strand, within LU632_RS04725 at 926.710 kb on - strand, within LU632_RS04725 at 926.793 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.956 kb on + strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 926.963 kb on - strand, within LU632_RS04725 at 927.082 kb on + strand, within LU632_RS04725 at 927.088 kb on + strand, within LU632_RS04725 at 927.161 kb on + strand, within LU632_RS04725 at 927.187 kb on + strand, within LU632_RS04725 at 927.299 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.435 kb on + strand, within LU632_RS04725 at 927.436 kb on - strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.437 kb on + strand, within LU632_RS04725 at 927.438 kb on - strand, within LU632_RS04725 at 927.533 kb on - strand, within LU632_RS04725 at 927.536 kb on + strand, within LU632_RS04725 at 927.536 kb on + strand, within LU632_RS04725 at 927.537 kb on - strand, within LU632_RS04725 at 927.666 kb on + strand, within LU632_RS04725 at 927.666 kb on + strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.667 kb on - strand, within LU632_RS04725 at 927.692 kb on + strand, within LU632_RS04725 at 927.693 kb on - strand, within LU632_RS04725 at 927.693 kb on - strand, within LU632_RS04725 at 927.749 kb on - strand, within LU632_RS04725 at 927.753 kb on - strand, within LU632_RS04725 at 927.759 kb on - strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.776 kb on + strand, within LU632_RS04725 at 927.777 kb on - strand, within LU632_RS04725 at 927.874 kb on + strand, within LU632_RS04725 at 928.057 kb on + strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.604 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.724 kb on - strand, within LU632_RS04725 at 928.731 kb on - strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.808 kb on - strand, within LU632_RS04725 at 928.923 kb on - strand, within LU632_RS04725 at 928.957 kb on + strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.972 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 925,338 - LU632_RS04715 0.82 +1.0 925,391 - LU632_RS04715 0.89 -0.1 925,413 - -2.0 925,500 - +2.1 925,500 - -0.2 925,500 - -1.3 925,500 - -1.0 925,501 + -1.2 925,501 + -1.1 925,501 + -0.2 925,501 + +1.6 925,501 + +0.4 925,502 + -1.5 925,502 - -1.8 925,549 - +0.3 925,576 + +0.6 925,577 - +0.6 925,577 - -2.6 925,600 + +0.2 925,600 + +1.0 925,600 + -1.0 925,600 + -0.6 925,601 - -0.5 925,601 - -0.3 925,601 - +0.4 925,628 + -1.3 925,628 + +0.6 925,628 + -1.0 925,629 - +4.0 925,631 - +0.9 925,631 - +0.2 925,684 + +0.6 925,684 + +2.2 925,685 - +1.8 925,685 - -3.5 925,762 + LU632_RS04720 0.12 +1.3 925,774 + LU632_RS04720 0.14 +2.2 925,781 - LU632_RS04720 0.15 -1.0 925,781 - LU632_RS04720 0.15 -0.6 925,886 - LU632_RS04720 0.32 +0.9 925,906 + LU632_RS04720 0.35 +2.6 925,906 + LU632_RS04720 0.35 +1.0 925,942 - LU632_RS04720 0.40 -2.3 925,943 + LU632_RS04720 0.41 +1.7 925,982 - LU632_RS04720 0.47 +0.4 926,032 + LU632_RS04720 0.55 +0.4 926,032 + LU632_RS04720 0.55 -1.3 926,212 + LU632_RS04720 0.83 -0.5 926,213 - LU632_RS04720 0.83 +1.5 926,228 + LU632_RS04720 0.85 +0.5 926,228 + LU632_RS04720 0.85 -0.8 926,228 + LU632_RS04720 0.85 +1.0 926,229 - LU632_RS04720 0.86 +0.3 926,229 - LU632_RS04720 0.86 +0.3 926,230 + LU632_RS04720 0.86 -0.8 926,278 + +1.3 926,336 - -0.5 926,381 + +1.7 926,610 + -2.9 926,681 + LU632_RS04725 0.12 -1.3 926,696 - LU632_RS04725 0.12 -0.0 926,710 - LU632_RS04725 0.13 +2.0 926,793 + LU632_RS04725 0.15 +0.4 926,956 + LU632_RS04725 0.21 +1.0 926,956 + LU632_RS04725 0.21 +0.2 926,963 - LU632_RS04725 0.21 -1.6 926,963 - LU632_RS04725 0.21 +0.2 927,082 + LU632_RS04725 0.25 -0.2 927,088 + LU632_RS04725 0.25 +0.7 927,161 + LU632_RS04725 0.27 +3.0 927,187 + LU632_RS04725 0.28 +0.9 927,299 + LU632_RS04725 0.31 -0.0 927,435 + LU632_RS04725 0.36 +2.6 927,435 + LU632_RS04725 0.36 -0.3 927,435 + LU632_RS04725 0.36 -1.8 927,435 + LU632_RS04725 0.36 +2.0 927,435 + LU632_RS04725 0.36 -0.3 927,436 - LU632_RS04725 0.36 -0.0 927,437 + LU632_RS04725 0.36 +0.9 927,437 + LU632_RS04725 0.36 +1.0 927,437 + LU632_RS04725 0.36 +1.0 927,437 + LU632_RS04725 0.36 +1.0 927,438 - LU632_RS04725 0.36 -0.2 927,533 - LU632_RS04725 0.39 -0.0 927,536 + LU632_RS04725 0.39 +0.5 927,536 + LU632_RS04725 0.39 +0.1 927,537 - LU632_RS04725 0.39 +1.9 927,666 + LU632_RS04725 0.43 -0.6 927,666 + LU632_RS04725 0.43 -0.5 927,667 - LU632_RS04725 0.43 -1.3 927,667 - LU632_RS04725 0.43 -2.0 927,667 - LU632_RS04725 0.43 -0.6 927,692 + LU632_RS04725 0.44 -0.4 927,693 - LU632_RS04725 0.44 +1.7 927,693 - LU632_RS04725 0.44 +1.5 927,749 - LU632_RS04725 0.46 +1.5 927,753 - LU632_RS04725 0.46 -1.3 927,759 - LU632_RS04725 0.46 -0.3 927,776 + LU632_RS04725 0.47 -2.0 927,776 + LU632_RS04725 0.47 +0.8 927,776 + LU632_RS04725 0.47 +0.4 927,777 - LU632_RS04725 0.47 -1.3 927,874 + LU632_RS04725 0.50 +0.4 928,057 + LU632_RS04725 0.56 +2.7 928,603 - LU632_RS04725 0.73 +1.4 928,603 - LU632_RS04725 0.73 +2.9 928,603 - LU632_RS04725 0.73 -1.0 928,604 + LU632_RS04725 0.73 +1.2 928,723 + LU632_RS04725 0.77 +1.1 928,723 + LU632_RS04725 0.77 +1.0 928,724 - LU632_RS04725 0.77 +1.0 928,731 - LU632_RS04725 0.77 -0.0 928,732 + LU632_RS04725 0.77 -0.4 928,732 + LU632_RS04725 0.77 +0.3 928,732 + LU632_RS04725 0.77 -0.5 928,733 - LU632_RS04725 0.77 +0.9 928,733 - LU632_RS04725 0.77 +1.4 928,807 + LU632_RS04725 0.79 +2.3 928,807 + LU632_RS04725 0.79 -0.6 928,808 - LU632_RS04725 0.79 -2.3 928,923 - LU632_RS04725 0.83 -0.0 928,957 + LU632_RS04725 0.84 +1.6 928,958 - LU632_RS04725 0.84 -0.6 928,958 - LU632_RS04725 0.84 +2.5 928,972 - LU632_RS04725 0.85 -1.0 929,082 - LU632_RS04725 0.88 -0.6 929,082 - LU632_RS04725 0.88 +1.0 929,395 + -1.8 929,413 + +0.9 929,469 + -1.6 929,470 - +1.0 929,470 - -1.4 929,518 + +1.0 929,563 + -0.5 929,563 + -0.0 929,563 + +1.1 929,563 + -2.4 929,631 - LU632_RS04730 0.10 -1.0 929,631 - LU632_RS04730 0.10 +0.5 929,727 - LU632_RS04730 0.32 -1.8 929,780 + LU632_RS04730 0.45 -1.2 929,780 + LU632_RS04730 0.45 -2.3 929,781 - LU632_RS04730 0.45 +0.3 929,781 - LU632_RS04730 0.45 +2.0 929,783 + LU632_RS04730 0.45 +1.9 929,892 - LU632_RS04730 0.70 +1.5 929,904 - LU632_RS04730 0.73 +0.9 930,014 + -0.0 930,014 + -3.2 930,019 - +3.4 930,173 + -1.0 930,173 + +0.4 930,449 + LU632_RS04735 0.14 -0.6
Or see this region's nucleotide sequence