Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04705 and LU632_RS04710 are separated by 416 nucleotides LU632_RS04710 and LU632_RS04715 are separated by 350 nucleotides
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 923.083 kb on + strand at 923.084 kb on - strand at 923.085 kb on + strand at 923.086 kb on - strand at 923.087 kb on + strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.117 kb on - strand at 923.907 kb on - strand, within LU632_RS04710 at 924.491 kb on - strand at 924.491 kb on - strand at 924.491 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.590 kb on + strand at 924.591 kb on - strand at 924.591 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.599 kb on + strand at 924.600 kb on - strand at 924.601 kb on + strand at 924.602 kb on - strand at 924.629 kb on + strand at 924.630 kb on - strand at 924.665 kb on + strand at 924.666 kb on - strand at 924.666 kb on - strand at 924.672 kb on + strand at 924.673 kb on - strand at 924.674 kb on + strand at 924.674 kb on + strand at 924.675 kb on - strand at 924.675 kb on - strand at 924.689 kb on + strand at 924.708 kb on + strand at 924.728 kb on + strand at 924.752 kb on - strand at 924.854 kb on - strand, within LU632_RS04715 at 924.854 kb on - strand, within LU632_RS04715 at 924.958 kb on + strand, within LU632_RS04715 at 924.959 kb on - strand, within LU632_RS04715 at 924.963 kb on - strand, within LU632_RS04715 at 925.119 kb on + strand, within LU632_RS04715 at 925.119 kb on - strand, within LU632_RS04715 at 925.120 kb on - strand, within LU632_RS04715 at 925.142 kb on - strand, within LU632_RS04715 at 925.338 kb on - strand, within LU632_RS04715
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 923,083 + -1.6 923,084 - -0.9 923,085 + -0.9 923,086 - -1.0 923,087 + +0.4 923,088 - +0.8 923,088 - -0.8 923,088 - +1.5 923,088 - +1.0 923,088 - +1.0 923,117 - -0.2 923,907 - LU632_RS04710 0.55 +0.5 924,491 - -1.0 924,491 - -0.2 924,491 - -0.5 924,516 - +1.8 924,516 - -3.7 924,568 + +0.1 924,569 - +0.5 924,590 + +1.0 924,591 - -0.9 924,591 - -2.5 924,597 + +1.3 924,598 - +1.0 924,599 + -2.8 924,600 - +0.6 924,601 + -0.1 924,602 - +0.4 924,629 + +1.0 924,630 - +1.4 924,665 + +0.7 924,666 - +3.5 924,666 - -0.4 924,672 + +0.9 924,673 - +0.3 924,674 + -0.6 924,674 + +1.0 924,675 - +0.3 924,675 - +0.2 924,689 + +2.6 924,708 + -0.1 924,728 + +0.8 924,752 - +1.5 924,854 - LU632_RS04715 0.19 +0.0 924,854 - LU632_RS04715 0.19 +1.1 924,958 + LU632_RS04715 0.32 +1.0 924,959 - LU632_RS04715 0.32 +0.4 924,963 - LU632_RS04715 0.33 +0.6 925,119 + LU632_RS04715 0.53 +0.5 925,119 - LU632_RS04715 0.53 +0.6 925,120 - LU632_RS04715 0.53 +0.4 925,142 - LU632_RS04715 0.56 +0.0 925,338 - LU632_RS04715 0.82 +1.0
Or see this region's nucleotide sequence