Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04675

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04670 and LU632_RS04675 overlap by 4 nucleotidesLU632_RS04675 and LU632_RS04680 are separated by 248 nucleotides LU632_RS04670: LU632_RS04670 - conjugative transfer ATPase, at 914,918 to 916,131 _RS04670 LU632_RS04675: LU632_RS04675 - hypothetical protein, at 916,128 to 916,532 _RS04675 LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689 _RS04680 Position (kb) 916 917Strain fitness (log2 ratio) -1 0 1at 916.721 kb on + strandat 916.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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916,721 + -1.5
916,722 - -0.3

Or see this region's nucleotide sequence