Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04625 and LU632_RS04630 are separated by 215 nucleotides LU632_RS04630 and LU632_RS04635 overlap by 85 nucleotides
LU632_RS04625: LU632_RS04625 - hypothetical protein, at 903,797 to 904,717
_RS04625
LU632_RS04630: LU632_RS04630 - hypothetical protein, at 904,933 to 905,238
_RS04630
LU632_RS04635: LU632_RS04635 - IS3 family transposase, at 905,154 to 906,354
_RS04635
Position (kb) 904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 903.964 kb on + strand, within LU632_RS04625 at 903.964 kb on + strand, within LU632_RS04625 at 904.148 kb on + strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.255 kb on + strand, within LU632_RS04625 at 904.302 kb on - strand, within LU632_RS04625 at 904.397 kb on - strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.431 kb on - strand, within LU632_RS04625 at 904.498 kb on + strand, within LU632_RS04625 at 904.511 kb on - strand, within LU632_RS04625 at 904.646 kb on + strand at 904.647 kb on - strand at 904.664 kb on + strand at 904.665 kb on - strand at 904.696 kb on + strand at 905.139 kb on + strand, within LU632_RS04630 at 905.139 kb on + strand, within LU632_RS04630 at 905.149 kb on - strand, within LU632_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 903,964 + LU632_RS04625 0.18 +0.2 903,964 + LU632_RS04625 0.18 +0.3 904,148 + LU632_RS04625 0.38 -1.0 904,160 - LU632_RS04625 0.39 +0.5 904,160 - LU632_RS04625 0.39 -1.0 904,160 - LU632_RS04625 0.39 +1.7 904,255 + LU632_RS04625 0.50 +2.0 904,302 - LU632_RS04625 0.55 -2.5 904,397 - LU632_RS04625 0.65 +0.6 904,402 + LU632_RS04625 0.66 -1.6 904,402 + LU632_RS04625 0.66 -0.2 904,402 + LU632_RS04625 0.66 +1.5 904,403 - LU632_RS04625 0.66 -0.6 904,403 - LU632_RS04625 0.66 +4.8 904,403 - LU632_RS04625 0.66 -0.5 904,403 - LU632_RS04625 0.66 -2.3 904,403 - LU632_RS04625 0.66 -2.1 904,403 - LU632_RS04625 0.66 +1.5 904,403 - LU632_RS04625 0.66 -1.3 904,403 - LU632_RS04625 0.66 -0.0 904,431 - LU632_RS04625 0.69 -0.6 904,498 + LU632_RS04625 0.76 +1.2 904,511 - LU632_RS04625 0.78 +1.0 904,646 + -0.3 904,647 - +2.0 904,664 + -1.0 904,665 - -1.3 904,696 + -1.6 905,139 + LU632_RS04630 0.67 -2.2 905,139 + LU632_RS04630 0.67 +3.9 905,149 - LU632_RS04630 0.71 +0.7
Or see this region's nucleotide sequence