Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04275 and araD overlap by 4 nucleotides araD and LU632_RS04285 are separated by 89 nucleotides LU632_RS04285 and LU632_RS04290 are separated by 582 nucleotides
LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200
_RS04275
LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895
araD
LU632_RS04285: LU632_RS04285 - IS5 family transposase, at 851,985 to 852,801
_RS04285
LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223
_RS04290
Position (kb) 851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.256 kb on + strand at 851.256 kb on + strand at 851.257 kb on - strand at 851.257 kb on - strand at 851.341 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.364 kb on + strand, within araD at 851.365 kb on - strand, within araD at 851.365 kb on - strand, within araD at 851.399 kb on + strand, within araD at 851.485 kb on - strand, within araD at 851.485 kb on - strand, within araD at 851.621 kb on - strand, within araD at 851.626 kb on + strand, within araD at 851.627 kb on - strand, within araD at 851.627 kb on - strand, within araD at 851.647 kb on - strand, within araD at 851.648 kb on + strand, within araD at 851.649 kb on - strand, within araD at 851.649 kb on - strand, within araD at 851.670 kb on + strand, within araD at 851.730 kb on + strand, within araD at 851.762 kb on + strand, within araD at 851.763 kb on - strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.782 kb on + strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.783 kb on - strand, within araD at 851.855 kb on - strand at 851.882 kb on - strand at 851.896 kb on + strand at 851.899 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.832 kb on + strand at 852.834 kb on + strand at 852.961 kb on - strand at 853.049 kb on + strand at 853.165 kb on + strand at 853.165 kb on + strand at 853.165 kb on + strand at 853.169 kb on + strand at 853.169 kb on + strand at 853.170 kb on - strand at 853.170 kb on - strand at 853.743 kb on + strand, within LU632_RS04290 at 853.744 kb on - strand, within LU632_RS04290 at 853.771 kb on + strand, within LU632_RS04290 at 853.772 kb on - strand, within LU632_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 851,256 + -1.3 851,256 + -0.2 851,257 - +1.6 851,257 - -0.7 851,341 + araD LU632_RS04280 0.21 -2.2 851,364 + araD LU632_RS04280 0.24 +0.3 851,364 + araD LU632_RS04280 0.24 +1.4 851,365 - araD LU632_RS04280 0.24 -1.3 851,365 - araD LU632_RS04280 0.24 -0.3 851,399 + araD LU632_RS04280 0.29 +1.0 851,485 - araD LU632_RS04280 0.41 -1.0 851,485 - araD LU632_RS04280 0.41 -1.0 851,621 - araD LU632_RS04280 0.61 -1.8 851,626 + araD LU632_RS04280 0.61 -2.3 851,627 - araD LU632_RS04280 0.62 -2.0 851,627 - araD LU632_RS04280 0.62 -0.9 851,647 - araD LU632_RS04280 0.64 -2.7 851,648 + araD LU632_RS04280 0.65 -0.0 851,649 - araD LU632_RS04280 0.65 -1.0 851,649 - araD LU632_RS04280 0.65 -2.5 851,670 + araD LU632_RS04280 0.68 -0.6 851,730 + araD LU632_RS04280 0.76 -1.0 851,762 + araD LU632_RS04280 0.81 -1.3 851,763 - araD LU632_RS04280 0.81 -1.0 851,782 + araD LU632_RS04280 0.84 +0.4 851,782 + araD LU632_RS04280 0.84 -1.0 851,782 + araD LU632_RS04280 0.84 -0.0 851,783 - araD LU632_RS04280 0.84 -1.2 851,783 - araD LU632_RS04280 0.84 -2.7 851,783 - araD LU632_RS04280 0.84 -0.8 851,783 - araD LU632_RS04280 0.84 -1.6 851,783 - araD LU632_RS04280 0.84 -2.3 851,855 - -2.3 851,882 - +0.7 851,896 + +2.0 851,899 + -1.6 852,832 + -0.1 852,832 + +1.0 852,832 + -0.4 852,832 + -0.6 852,832 + +1.6 852,832 + -1.5 852,834 + +1.0 852,961 - +1.2 853,049 + +1.0 853,165 + -0.2 853,165 + +3.1 853,165 + -0.6 853,169 + +0.2 853,169 + -0.5 853,170 - +0.7 853,170 - +1.3 853,743 + LU632_RS04290 0.43 -0.8 853,744 - LU632_RS04290 0.43 +2.1 853,771 + LU632_RS04290 0.46 +1.2 853,772 - LU632_RS04290 0.46 +0.4
Or see this region's nucleotide sequence