Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04090 and LU632_RS04095 are separated by 37 nucleotides LU632_RS04095 and LU632_RS04100 overlap by 82 nucleotides LU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides LU632_RS04105 and LU632_RS04110 are separated by 123 nucleotides LU632_RS04110 and LU632_RS04115 are separated by 37 nucleotides
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400
_RS04095
LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594
_RS04100
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608
_RS04110
LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125
_RS04115
Position (kb) 816
817
818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 816.619 kb on + strand at 816.651 kb on + strand at 816.652 kb on - strand at 816.654 kb on + strand at 816.654 kb on + strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.756 kb on + strand at 816.779 kb on - strand at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105 at 816.900 kb on - strand, within LU632_RS04105 at 817.082 kb on + strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.133 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.393 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.463 kb on + strand, within LU632_RS04105 at 817.527 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.564 kb on - strand, within LU632_RS04105 at 817.634 kb on - strand at 817.639 kb on - strand at 817.712 kb on + strand at 817.712 kb on + strand at 817.718 kb on + strand at 817.782 kb on + strand at 817.783 kb on - strand at 817.783 kb on - strand at 817.936 kb on + strand, within LU632_RS04110 at 817.936 kb on + strand, within LU632_RS04110 at 818.127 kb on + strand, within LU632_RS04110 at 818.128 kb on - strand, within LU632_RS04110 at 818.243 kb on + strand, within LU632_RS04110 at 818.244 kb on - strand, within LU632_RS04110 at 818.308 kb on - strand, within LU632_RS04110 at 818.506 kb on + strand, within LU632_RS04110 at 818.535 kb on + strand at 818.535 kb on + strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.585 kb on - strand at 818.585 kb on - strand at 818.602 kb on + strand at 818.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 815,755 - LU632_RS04090 0.86 +1.1 815,828 + +1.0 815,828 + +0.3 815,829 - -1.0 815,829 - +0.7 815,829 - +1.5 815,829 - -0.4 816,619 + -4.4 816,651 + -0.6 816,652 - -1.8 816,654 + -1.3 816,654 + +2.0 816,655 - +0.6 816,655 - +1.3 816,655 - +3.3 816,756 + +2.0 816,779 - -1.0 816,856 + LU632_RS04105 0.14 -1.0 816,857 - LU632_RS04105 0.14 +1.2 816,900 - LU632_RS04105 0.19 +0.0 817,082 + LU632_RS04105 0.38 -0.3 817,098 - LU632_RS04105 0.40 -0.8 817,098 - LU632_RS04105 0.40 +2.0 817,098 - LU632_RS04105 0.40 -0.4 817,133 + LU632_RS04105 0.44 -0.4 817,203 + LU632_RS04105 0.51 +1.2 817,203 + LU632_RS04105 0.51 +1.0 817,203 + LU632_RS04105 0.51 +0.6 817,203 + LU632_RS04105 0.51 -2.2 817,203 + LU632_RS04105 0.51 -0.1 817,204 - LU632_RS04105 0.51 +0.7 817,204 - LU632_RS04105 0.51 +0.5 817,373 + LU632_RS04105 0.69 -0.0 817,373 + LU632_RS04105 0.69 -2.3 817,374 - LU632_RS04105 0.69 -1.0 817,374 - LU632_RS04105 0.69 +2.1 817,393 + LU632_RS04105 0.71 -1.3 817,405 + LU632_RS04105 0.73 +0.2 817,405 + LU632_RS04105 0.73 -0.6 817,406 - LU632_RS04105 0.73 -1.0 817,406 - LU632_RS04105 0.73 -1.0 817,406 - LU632_RS04105 0.73 +0.9 817,463 + LU632_RS04105 0.79 -1.2 817,527 - LU632_RS04105 0.85 -0.0 817,553 - LU632_RS04105 0.88 -0.0 817,553 - LU632_RS04105 0.88 -0.5 817,564 - LU632_RS04105 0.89 +0.7 817,634 - +1.4 817,639 - +2.3 817,712 + +1.3 817,712 + +0.6 817,718 + -0.3 817,782 + -0.0 817,783 - -0.4 817,783 - -2.1 817,936 + LU632_RS04110 0.18 -1.0 817,936 + LU632_RS04110 0.18 +0.5 818,127 + LU632_RS04110 0.41 -2.5 818,128 - LU632_RS04110 0.41 +0.8 818,243 + LU632_RS04110 0.55 -0.0 818,244 - LU632_RS04110 0.56 +2.3 818,308 - LU632_RS04110 0.63 -1.1 818,506 + LU632_RS04110 0.87 -1.0 818,535 + -1.4 818,535 + -0.3 818,536 - +2.6 818,536 - -0.0 818,536 - +2.0 818,536 - -1.0 818,585 - -1.6 818,585 - -0.0 818,602 + +1.5 818,625 - -0.0
Or see this region's nucleotide sequence