Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04050 and LU632_RS04055 are separated by 72 nucleotides LU632_RS04055 and tnpA are separated by 113 nucleotides tnpA and LU632_RS04065 are separated by 81 nucleotides LU632_RS04065 and LU632_RS04070 are separated by 20 nucleotides
LU632_RS04050: LU632_RS04050 - IS3 family transposase, at 808,733 to 809,896
_RS04050
LU632_RS04055: LU632_RS04055 - GntR family transcriptional regulator, at 809,969 to 810,166
_RS04055
LU632_RS04060: tnpA - IS200/IS605 family transposase, at 810,280 to 810,720
tnpA
LU632_RS04065: LU632_RS04065 - AlpA family phage regulatory protein, at 810,802 to 811,080
_RS04065
LU632_RS04070: LU632_RS04070 - Rha family transcriptional regulator, at 811,101 to 811,700
_RS04070
Position (kb) 809
810
811 Strain fitness (log2 ratio) -1
0
1
2 at 810.025 kb on + strand, within LU632_RS04055 at 810.026 kb on - strand, within LU632_RS04055 at 810.035 kb on - strand, within LU632_RS04055 at 810.117 kb on - strand, within LU632_RS04055 at 810.813 kb on + strand at 810.822 kb on + strand at 810.859 kb on - strand, within LU632_RS04065 at 810.880 kb on - strand, within LU632_RS04065 at 810.981 kb on + strand, within LU632_RS04065 at 811.083 kb on - strand at 811.092 kb on + strand at 811.093 kb on - strand at 811.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 810,025 + LU632_RS04055 0.28 +0.9 810,026 - LU632_RS04055 0.29 +0.1 810,035 - LU632_RS04055 0.33 +1.0 810,117 - LU632_RS04055 0.75 +2.5 810,813 + -0.8 810,822 + +0.4 810,859 - LU632_RS04065 0.20 +1.0 810,880 - LU632_RS04065 0.28 -1.6 810,981 + LU632_RS04065 0.64 +0.3 811,083 - -0.6 811,092 + +1.4 811,093 - +0.2 811,111 + -1.3
Or see this region's nucleotide sequence