Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04015 and LU632_RS04020 are separated by 63 nucleotides LU632_RS04020 and LU632_RS04025 are separated by 3 nucleotides LU632_RS04025 and LU632_RS04030 are separated by 4 nucleotides LU632_RS04030 and LU632_RS04035 are separated by 840 nucleotides
LU632_RS04015: LU632_RS04015 - IS481 family transposase, at 804,144 to 805,034
_RS04015
LU632_RS04020: LU632_RS04020 - BrnA antitoxin family protein, at 805,098 to 805,283
_RS04020
LU632_RS04025: LU632_RS04025 - winged helix-turn-helix transcriptional regulator, at 805,287 to 805,637
_RS04025
LU632_RS04030: LU632_RS04030 - DUF6516 family protein, at 805,642 to 805,923
_RS04030
LU632_RS04035: LU632_RS04035 - Rha family transcriptional regulator, at 806,764 to 807,075
_RS04035
Position (kb) 805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 805.118 kb on + strand, within LU632_RS04020 at 805.139 kb on + strand, within LU632_RS04020 at 805.140 kb on - strand, within LU632_RS04020 at 805.148 kb on + strand, within LU632_RS04020 at 805.248 kb on + strand, within LU632_RS04020 at 805.249 kb on - strand, within LU632_RS04020 at 805.298 kb on + strand at 805.782 kb on + strand, within LU632_RS04030 at 805.796 kb on + strand, within LU632_RS04030 at 805.797 kb on - strand, within LU632_RS04030 at 805.808 kb on + strand, within LU632_RS04030 at 805.813 kb on - strand, within LU632_RS04030 at 805.813 kb on - strand, within LU632_RS04030 at 805.813 kb on - strand, within LU632_RS04030 at 805.815 kb on - strand, within LU632_RS04030 at 805.894 kb on + strand, within LU632_RS04030 at 805.970 kb on + strand at 805.970 kb on + strand at 805.970 kb on + strand at 805.971 kb on - strand at 806.196 kb on - strand at 806.239 kb on - strand at 806.239 kb on - strand at 806.273 kb on - strand at 806.276 kb on - strand at 806.280 kb on + strand at 806.291 kb on + strand at 806.345 kb on + strand at 806.346 kb on - strand at 806.372 kb on - strand at 806.382 kb on - strand at 806.382 kb on - strand at 806.400 kb on + strand at 806.472 kb on - strand at 806.492 kb on + strand at 806.493 kb on - strand at 806.604 kb on - strand at 806.630 kb on - strand at 806.635 kb on + strand at 806.692 kb on + strand at 806.693 kb on - strand at 806.693 kb on - strand at 806.731 kb on + strand at 806.731 kb on + strand at 806.732 kb on - strand at 806.732 kb on - strand at 806.732 kb on - strand at 806.760 kb on + strand at 806.776 kb on + strand at 806.809 kb on + strand, within LU632_RS04035 at 806.810 kb on - strand, within LU632_RS04035 at 806.810 kb on - strand, within LU632_RS04035 at 806.818 kb on - strand, within LU632_RS04035 at 806.849 kb on + strand, within LU632_RS04035 at 806.887 kb on + strand, within LU632_RS04035 at 806.887 kb on + strand, within LU632_RS04035 at 806.887 kb on + strand, within LU632_RS04035 at 806.888 kb on - strand, within LU632_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 805,118 + LU632_RS04020 0.11 -0.7 805,139 + LU632_RS04020 0.22 +0.0 805,140 - LU632_RS04020 0.23 -0.8 805,148 + LU632_RS04020 0.27 +0.4 805,248 + LU632_RS04020 0.81 +0.9 805,249 - LU632_RS04020 0.81 +0.3 805,298 + +0.9 805,782 + LU632_RS04030 0.50 -2.3 805,796 + LU632_RS04030 0.55 +1.6 805,797 - LU632_RS04030 0.55 -0.6 805,808 + LU632_RS04030 0.59 +1.7 805,813 - LU632_RS04030 0.61 +1.0 805,813 - LU632_RS04030 0.61 +1.5 805,813 - LU632_RS04030 0.61 +0.7 805,815 - LU632_RS04030 0.61 -1.0 805,894 + LU632_RS04030 0.89 +2.0 805,970 + -0.6 805,970 + -0.6 805,970 + +0.0 805,971 - -1.1 806,196 - +1.4 806,239 - -0.5 806,239 - -1.0 806,273 - -0.7 806,276 - -0.2 806,280 + -0.1 806,291 + -0.2 806,345 + +0.1 806,346 - -1.1 806,372 - +1.6 806,382 - -0.6 806,382 - +0.1 806,400 + +0.6 806,472 - +0.1 806,492 + -0.5 806,493 - +0.4 806,604 - -1.3 806,630 - -0.6 806,635 + -0.8 806,692 + +3.6 806,693 - +1.4 806,693 - +3.0 806,731 + -0.8 806,731 + -0.1 806,732 - -1.3 806,732 - +3.3 806,732 - -0.3 806,760 + +1.1 806,776 + +0.2 806,809 + LU632_RS04035 0.14 -2.2 806,810 - LU632_RS04035 0.15 -1.3 806,810 - LU632_RS04035 0.15 +0.7 806,818 - LU632_RS04035 0.17 +0.8 806,849 + LU632_RS04035 0.27 -1.0 806,887 + LU632_RS04035 0.39 -0.4 806,887 + LU632_RS04035 0.39 -3.5 806,887 + LU632_RS04035 0.39 +1.0 806,888 - LU632_RS04035 0.40 +0.4
Or see this region's nucleotide sequence