Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03985 and LU632_RS03990 are separated by 281 nucleotides LU632_RS03990 and LU632_RS03995 are separated by 102 nucleotides LU632_RS03995 and LU632_RS04000 overlap by 33 nucleotides LU632_RS04000 and LU632_RS04005 are separated by 89 nucleotides LU632_RS04005 and LU632_RS04010 are separated by 8 nucleotides LU632_RS04010 and LU632_RS04015 are separated by 50 nucleotides
LU632_RS03985: LU632_RS03985 - tyrosine-type recombinase/integrase, at 801,420 to 802,198
_RS03985
LU632_RS03990: LU632_RS03990 - hypothetical protein, at 802,480 to 802,935
_RS03990
LU632_RS03995: LU632_RS03995 - hypothetical protein, at 803,038 to 803,166
_RS03995
LU632_RS04000: LU632_RS04000 - helix-turn-helix domain-containing protein, at 803,134 to 803,268
_RS04000
LU632_RS04005: LU632_RS04005 - HNH/ENDO VII family nuclease, at 803,358 to 803,663
_RS04005
LU632_RS04010: LU632_RS04010 - SMI1/KNR4 family protein, at 803,672 to 804,093
_RS04010
LU632_RS04015: LU632_RS04015 - IS481 family transposase, at 804,144 to 805,034
_RS04015
Position (kb) 803
804 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 802.367 kb on + strand at 802.427 kb on + strand at 802.428 kb on - strand at 802.428 kb on - strand at 802.428 kb on - strand at 803.043 kb on + strand at 803.044 kb on - strand at 803.044 kb on - strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.047 kb on + strand at 803.048 kb on - strand at 803.054 kb on - strand, within LU632_RS03995 at 803.274 kb on + strand at 803.284 kb on - strand at 803.314 kb on + strand at 803.314 kb on + strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.315 kb on - strand at 803.319 kb on - strand at 803.334 kb on - strand at 803.334 kb on - strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.375 kb on + strand at 803.376 kb on - strand at 803.381 kb on + strand at 803.474 kb on - strand, within LU632_RS04005 at 803.532 kb on - strand, within LU632_RS04005 at 803.551 kb on + strand, within LU632_RS04005 at 803.552 kb on - strand, within LU632_RS04005 at 803.552 kb on - strand, within LU632_RS04005 at 803.564 kb on - strand, within LU632_RS04005 at 803.627 kb on + strand, within LU632_RS04005 at 803.627 kb on + strand, within LU632_RS04005 at 803.750 kb on - strand, within LU632_RS04010 at 803.760 kb on + strand, within LU632_RS04010 at 803.871 kb on + strand, within LU632_RS04010 at 803.875 kb on - strand, within LU632_RS04010 at 803.903 kb on + strand, within LU632_RS04010 at 803.995 kb on - strand, within LU632_RS04010 at 803.996 kb on + strand, within LU632_RS04010 at 804.000 kb on + strand, within LU632_RS04010 at 804.000 kb on + strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.001 kb on - strand, within LU632_RS04010 at 804.007 kb on - strand, within LU632_RS04010 at 804.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 802,367 + +0.1 802,427 + +2.1 802,428 - +0.6 802,428 - +0.9 802,428 - -1.0 803,043 + -0.6 803,044 - +0.8 803,044 - -0.6 803,047 + -2.5 803,047 + +1.8 803,047 + +0.7 803,047 + -2.3 803,047 + -0.5 803,047 + -0.0 803,048 - +2.0 803,054 - LU632_RS03995 0.12 +1.2 803,274 + -1.0 803,284 - +3.3 803,314 + -3.7 803,314 + +0.7 803,315 - -0.5 803,315 - +2.2 803,315 - -2.3 803,315 - +2.1 803,319 - -0.3 803,334 - +0.1 803,334 - +0.2 803,375 + +0.7 803,375 + +0.8 803,375 + -3.0 803,375 + +1.0 803,375 + +1.6 803,376 - +0.3 803,381 + -1.0 803,474 - LU632_RS04005 0.38 +0.4 803,532 - LU632_RS04005 0.57 -1.6 803,551 + LU632_RS04005 0.63 +0.9 803,552 - LU632_RS04005 0.63 +1.1 803,552 - LU632_RS04005 0.63 -1.6 803,564 - LU632_RS04005 0.67 +0.6 803,627 + LU632_RS04005 0.88 -0.8 803,627 + LU632_RS04005 0.88 -1.9 803,750 - LU632_RS04010 0.18 +0.4 803,760 + LU632_RS04010 0.21 -2.0 803,871 + LU632_RS04010 0.47 -0.1 803,875 - LU632_RS04010 0.48 -0.4 803,903 + LU632_RS04010 0.55 +1.2 803,995 - LU632_RS04010 0.77 -1.2 803,996 + LU632_RS04010 0.77 +0.3 804,000 + LU632_RS04010 0.78 +1.2 804,000 + LU632_RS04010 0.78 -1.5 804,001 - LU632_RS04010 0.78 -0.5 804,001 - LU632_RS04010 0.78 -0.5 804,001 - LU632_RS04010 0.78 -2.8 804,001 - LU632_RS04010 0.78 -0.6 804,007 - LU632_RS04010 0.79 -2.6 804,057 - +1.1
Or see this region's nucleotide sequence