Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03895

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
778,552	+				+0.4
778,567	+				+1.0
778,568	-				-0.5
778,568	-				+0.1
778,782	-		LU632_RS03890	0.85	-0.1
779,099	-				+0.5
779,185	-				+0.3
779,185	-				+0.1
779,425	-				-1.0
779,446	+				-0.0
779,455	+				-0.1
779,492	+				+2.5
779,492	+				+1.0
779,492	+				-0.6
779,493	-				-0.1
779,685	+		LU632_RS03895	0.27	-1.5
779,688	-		LU632_RS03895	0.27	+0.7
779,715	+		LU632_RS03895	0.30	-1.3
779,717	+		LU632_RS03895	0.31	-0.2
779,891	-		LU632_RS03895	0.53	-2.1
779,984	+		LU632_RS03895	0.65	+3.2
780,067	+		LU632_RS03895	0.76	-1.3
780,161	+		LU632_RS03895	0.89	+1.6
780,162	-		LU632_RS03895	0.89	-1.6
780,171	+		LU632_RS03895	0.90	-1.2
780,172	-				+2.0
780,251	+				+0.4
780,251	+				+1.6
780,252	-				+1.0
780,259	-				+0.4
780,275	+				-3.0
780,313	-				+1.1
780,313	-				+3.1
780,502	-				+2.3
780,507	-				+2.6
780,890	-				+0.3
780,923	+				+4.6
780,967	+				+0.7
780,967	+				-1.7
780,968	-				-0.8
781,050	-				-0.6
781,050	-				-2.0
781,239	+				-2.1