Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03885

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttssH and LU632_RS03885 are separated by 29 nucleotidesLU632_RS03885 and LU632_RS03890 are separated by 526 nucleotides LU632_RS03880: tssH - type VI secretion system ATPase TssH, at 773,997 to 776,612 tssH LU632_RS03885: LU632_RS03885 - serine/threonine protein kinase, at 776,642 to 778,027 _RS03885 LU632_RS03890: LU632_RS03890 - hypothetical protein, at 778,554 to 778,820 _RS03890 Position (kb) 776 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 775.723 kb on + strand, within tssHat 775.799 kb on + strand, within tssHat 775.817 kb on + strand, within tssHat 775.898 kb on + strand, within tssHat 775.911 kb on - strand, within tssHat 775.911 kb on - strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.913 kb on + strand, within tssHat 775.914 kb on - strand, within tssHat 776.072 kb on - strand, within tssHat 776.311 kb on - strand, within tssHat 776.624 kb on - strandat 776.786 kb on - strand, within LU632_RS03885at 776.803 kb on + strand, within LU632_RS03885at 776.803 kb on + strand, within LU632_RS03885at 776.952 kb on + strand, within LU632_RS03885at 776.952 kb on + strand, within LU632_RS03885at 776.953 kb on - strand, within LU632_RS03885at 776.984 kb on + strand, within LU632_RS03885at 776.984 kb on + strand, within LU632_RS03885at 776.985 kb on - strand, within LU632_RS03885at 777.122 kb on + strand, within LU632_RS03885at 777.123 kb on - strand, within LU632_RS03885at 777.136 kb on + strand, within LU632_RS03885at 777.136 kb on + strand, within LU632_RS03885at 777.137 kb on - strand, within LU632_RS03885at 777.138 kb on + strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.139 kb on - strand, within LU632_RS03885at 777.214 kb on + strand, within LU632_RS03885at 777.215 kb on - strand, within LU632_RS03885at 777.317 kb on - strand, within LU632_RS03885at 777.389 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.398 kb on - strand, within LU632_RS03885at 777.401 kb on + strand, within LU632_RS03885at 777.401 kb on + strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885at 777.402 kb on - strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.830 kb on + strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.831 kb on - strand, within LU632_RS03885at 777.899 kb on - strandat 777.982 kb on + strandat 778.055 kb on + strandat 778.056 kb on - strandat 778.056 kb on - strandat 778.080 kb on + strandat 778.127 kb on + strandat 778.127 kb on + strandat 778.128 kb on - strandat 778.146 kb on + strandat 778.146 kb on + strandat 778.149 kb on - strandat 778.149 kb on - strandat 778.277 kb on + strandat 778.278 kb on - strandat 778.278 kb on - strandat 778.289 kb on + strandat 778.353 kb on - strandat 778.409 kb on + strandat 778.409 kb on + strandat 778.409 kb on + strandat 778.410 kb on - strandat 778.413 kb on - strandat 778.413 kb on - strandat 778.552 kb on + strandat 778.567 kb on + strandat 778.568 kb on - strandat 778.568 kb on - strandat 778.782 kb on - strand, within LU632_RS03890

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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775,723 + tssH LU632_RS03880 0.66 -0.0
775,799 + tssH LU632_RS03880 0.69 -1.3
775,817 + tssH LU632_RS03880 0.70 -0.6
775,898 + tssH LU632_RS03880 0.73 -0.7
775,911 - tssH LU632_RS03880 0.73 +0.8
775,911 - tssH LU632_RS03880 0.73 -0.2
775,913 + tssH LU632_RS03880 0.73 +1.4
775,913 + tssH LU632_RS03880 0.73 +1.7
775,913 + tssH LU632_RS03880 0.73 -0.3
775,913 + tssH LU632_RS03880 0.73 +1.0
775,914 - tssH LU632_RS03880 0.73 -0.0
776,072 - tssH LU632_RS03880 0.79 -0.1
776,311 - tssH LU632_RS03880 0.88 +1.6
776,624 - -0.0
776,786 - LU632_RS03885 0.10 +1.3
776,803 + LU632_RS03885 0.12 -2.0
776,803 + LU632_RS03885 0.12 +0.1
776,952 + LU632_RS03885 0.22 -1.0
776,952 + LU632_RS03885 0.22 -2.2
776,953 - LU632_RS03885 0.22 +1.0
776,984 + LU632_RS03885 0.25 +1.7
776,984 + LU632_RS03885 0.25 +1.1
776,985 - LU632_RS03885 0.25 -0.5
777,122 + LU632_RS03885 0.35 -1.6
777,123 - LU632_RS03885 0.35 +1.0
777,136 + LU632_RS03885 0.36 -1.3
777,136 + LU632_RS03885 0.36 +1.0
777,137 - LU632_RS03885 0.36 +1.0
777,138 + LU632_RS03885 0.36 -1.7
777,139 - LU632_RS03885 0.36 +0.9
777,139 - LU632_RS03885 0.36 +1.2
777,139 - LU632_RS03885 0.36 +0.1
777,214 + LU632_RS03885 0.41 -0.0
777,215 - LU632_RS03885 0.41 +0.7
777,317 - LU632_RS03885 0.49 +2.5
777,389 - LU632_RS03885 0.54 -2.0
777,398 - LU632_RS03885 0.55 -2.8
777,398 - LU632_RS03885 0.55 -0.6
777,398 - LU632_RS03885 0.55 -1.5
777,401 + LU632_RS03885 0.55 +0.2
777,401 + LU632_RS03885 0.55 -1.3
777,402 - LU632_RS03885 0.55 +1.5
777,402 - LU632_RS03885 0.55 +1.8
777,402 - LU632_RS03885 0.55 +1.3
777,830 + LU632_RS03885 0.86 +0.4
777,830 + LU632_RS03885 0.86 -0.4
777,830 + LU632_RS03885 0.86 -1.5
777,830 + LU632_RS03885 0.86 -0.2
777,830 + LU632_RS03885 0.86 +0.6
777,830 + LU632_RS03885 0.86 -3.4
777,830 + LU632_RS03885 0.86 -2.0
777,830 + LU632_RS03885 0.86 -0.6
777,831 - LU632_RS03885 0.86 +0.8
777,831 - LU632_RS03885 0.86 +0.1
777,831 - LU632_RS03885 0.86 -0.6
777,831 - LU632_RS03885 0.86 +0.4
777,831 - LU632_RS03885 0.86 +0.1
777,831 - LU632_RS03885 0.86 +0.4
777,831 - LU632_RS03885 0.86 -0.0
777,831 - LU632_RS03885 0.86 +1.8
777,831 - LU632_RS03885 0.86 +1.4
777,899 - -0.3
777,982 + -2.1
778,055 + -0.7
778,056 - +0.5
778,056 - +2.7
778,080 + +0.4
778,127 + -3.3
778,127 + -1.0
778,128 - +1.0
778,146 + +0.6
778,146 + -2.8
778,149 - -0.1
778,149 - +1.0
778,277 + +0.1
778,278 - -1.0
778,278 - +2.4
778,289 + -2.3
778,353 - +1.8
778,409 + +1.3
778,409 + +3.1
778,409 + +3.8
778,410 - -0.0
778,413 - +0.1
778,413 - +0.9
778,552 + +0.4
778,567 + +1.0
778,568 - -0.5
778,568 - +0.1
778,782 - LU632_RS03890 0.85 -0.1

Or see this region's nucleotide sequence