Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03575 and LU632_RS03580 are separated by 93 nucleotides LU632_RS03580 and LU632_RS03585 overlap by 1 nucleotides LU632_RS03585 and LU632_RS03590 overlap by 10 nucleotides LU632_RS03590 and LU632_RS03595 overlap by 17 nucleotides LU632_RS03595 and lysB overlap by 4 nucleotides
LU632_RS03575: LU632_RS03575 - terminase endonuclease subunit, at 723,779 to 724,528
_RS03575
LU632_RS03580: LU632_RS03580 - head completion/stabilization protein, at 724,622 to 725,131
_RS03580
LU632_RS03585: LU632_RS03585 - tail protein X, at 725,131 to 725,334
_RS03585
LU632_RS03590: LU632_RS03590 - phage holin family protein, at 725,325 to 725,546
_RS03590
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
Position (kb) 725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 724.142 kb on + strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.143 kb on - strand, within LU632_RS03575 at 724.447 kb on + strand, within LU632_RS03575 at 724.526 kb on + strand at 724.609 kb on + strand at 724.610 kb on - strand at 724.633 kb on - strand at 724.707 kb on + strand, within LU632_RS03580 at 724.707 kb on + strand, within LU632_RS03580 at 724.708 kb on + strand, within LU632_RS03580 at 724.712 kb on - strand, within LU632_RS03580 at 724.717 kb on + strand, within LU632_RS03580 at 724.944 kb on - strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.982 kb on + strand, within LU632_RS03580 at 724.983 kb on - strand, within LU632_RS03580 at 725.325 kb on - strand at 725.336 kb on + strand at 725.424 kb on + strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.425 kb on - strand, within LU632_RS03590 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 724,142 + LU632_RS03575 0.48 -1.3 724,143 - LU632_RS03575 0.49 -0.2 724,143 - LU632_RS03575 0.49 -0.8 724,143 - LU632_RS03575 0.49 +0.0 724,447 + LU632_RS03575 0.89 -1.1 724,526 + -0.1 724,609 + -0.4 724,610 - -2.0 724,633 - +0.9 724,707 + LU632_RS03580 0.17 -3.2 724,707 + LU632_RS03580 0.17 -1.0 724,708 + LU632_RS03580 0.17 -0.1 724,712 - LU632_RS03580 0.18 +0.8 724,717 + LU632_RS03580 0.19 +0.8 724,944 - LU632_RS03580 0.63 +1.0 724,982 + LU632_RS03580 0.71 -1.4 724,982 + LU632_RS03580 0.71 -1.3 724,983 - LU632_RS03580 0.71 -2.2 725,325 - +0.8 725,336 + -1.1 725,424 + LU632_RS03590 0.45 +3.1 725,425 - LU632_RS03590 0.45 -1.2 725,425 - LU632_RS03590 0.45 +0.7 725,905 + LU632_RS03595 0.74 +1.3 725,906 - LU632_RS03595 0.74 -0.6 725,906 - LU632_RS03595 0.74 -3.2 725,906 - LU632_RS03595 0.74 -0.8 725,959 + LU632_RS03595 0.84 +0.8 725,959 + LU632_RS03595 0.84 -0.6 726,043 + +2.2 726,043 + +0.3 726,044 - +0.4 726,110 - lysB LU632_RS03600 0.18 -0.6 726,299 - lysB LU632_RS03600 0.64 -2.4 726,302 + lysB LU632_RS03600 0.64 +1.0 726,330 + lysB LU632_RS03600 0.71 +0.2
Or see this region's nucleotide sequence