Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03435 and LU632_RS03440 are separated by 396 nucleotides LU632_RS03440 and LU632_RS03445 are separated by 18 nucleotides LU632_RS03445 and LU632_RS03450 are separated by 103 nucleotides
LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996
_RS03435
LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836
_RS03440
LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322
_RS03445
LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979
_RS03450
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 702.472 kb on + strand, within LU632_RS03435 at 702.547 kb on - strand, within LU632_RS03435 at 702.592 kb on + strand, within LU632_RS03435 at 702.592 kb on + strand, within LU632_RS03435 at 702.592 kb on + strand, within LU632_RS03435 at 702.593 kb on - strand, within LU632_RS03435 at 702.593 kb on - strand, within LU632_RS03435 at 702.593 kb on - strand, within LU632_RS03435 at 702.645 kb on + strand, within LU632_RS03435 at 702.670 kb on - strand, within LU632_RS03435 at 702.673 kb on - strand, within LU632_RS03435 at 702.725 kb on + strand at 702.794 kb on - strand at 702.794 kb on - strand at 702.825 kb on - strand at 702.825 kb on - strand at 702.825 kb on - strand at 702.949 kb on + strand at 702.949 kb on + strand at 702.950 kb on - strand at 702.962 kb on - strand at 703.083 kb on + strand at 703.343 kb on + strand at 703.347 kb on + strand at 703.347 kb on + strand at 703.347 kb on + strand at 703.348 kb on - strand at 703.348 kb on - strand at 703.348 kb on - strand at 703.349 kb on + strand at 703.349 kb on + strand at 703.350 kb on - strand at 703.351 kb on + strand at 703.351 kb on + strand at 703.406 kb on + strand at 703.414 kb on + strand at 703.491 kb on - strand, within LU632_RS03440 at 703.506 kb on + strand, within LU632_RS03440 at 703.653 kb on + strand, within LU632_RS03440 at 703.654 kb on - strand, within LU632_RS03440 at 703.819 kb on + strand at 703.820 kb on - strand at 703.822 kb on + strand at 703.823 kb on - strand at 703.823 kb on - strand at 703.975 kb on - strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.102 kb on - strand, within LU632_RS03445 at 704.144 kb on - strand, within LU632_RS03445 at 704.176 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.447 kb on + strand at 704.448 kb on - strand at 704.522 kb on - strand at 704.562 kb on + strand at 704.566 kb on + strand at 704.640 kb on + strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 702,472 + LU632_RS03435 0.81 +0.1 702,547 - LU632_RS03435 0.84 -0.6 702,592 + LU632_RS03435 0.86 +1.0 702,592 + LU632_RS03435 0.86 +0.0 702,592 + LU632_RS03435 0.86 -0.6 702,593 - LU632_RS03435 0.86 -0.5 702,593 - LU632_RS03435 0.86 +0.7 702,593 - LU632_RS03435 0.86 -3.1 702,645 + LU632_RS03435 0.87 -1.8 702,670 - LU632_RS03435 0.88 -1.0 702,673 - LU632_RS03435 0.88 -1.3 702,725 + -2.3 702,794 - -0.7 702,794 - +2.3 702,825 - +0.3 702,825 - -0.5 702,825 - -1.8 702,949 + -0.7 702,949 + -0.3 702,950 - +3.8 702,962 - +1.0 703,083 + +0.4 703,343 + +1.3 703,347 + +0.9 703,347 + -2.9 703,347 + -2.6 703,348 - +2.3 703,348 - -0.5 703,348 - -0.1 703,349 + -0.2 703,349 + +0.9 703,350 - +1.0 703,351 + -3.0 703,351 + +1.1 703,406 + -3.2 703,414 + +1.0 703,491 - LU632_RS03440 0.22 +1.8 703,506 + LU632_RS03440 0.25 +0.3 703,653 + LU632_RS03440 0.59 +0.0 703,654 - LU632_RS03440 0.59 +1.0 703,819 + +0.1 703,820 - +2.6 703,822 + -0.6 703,823 - +0.8 703,823 - +0.7 703,975 - LU632_RS03445 0.26 -0.6 704,045 + LU632_RS03445 0.41 -0.1 704,045 + LU632_RS03445 0.41 -3.7 704,045 + LU632_RS03445 0.41 +0.0 704,046 - LU632_RS03445 0.41 +2.8 704,046 - LU632_RS03445 0.41 +1.8 704,084 + LU632_RS03445 0.49 +1.7 704,084 + LU632_RS03445 0.49 -0.6 704,101 + LU632_RS03445 0.53 -1.7 704,101 + LU632_RS03445 0.53 +0.0 704,101 + LU632_RS03445 0.53 -0.6 704,101 + LU632_RS03445 0.53 +0.4 704,102 - LU632_RS03445 0.53 +1.1 704,144 - LU632_RS03445 0.62 +0.1 704,176 + LU632_RS03445 0.69 +2.6 704,183 + LU632_RS03445 0.70 +1.0 704,183 + LU632_RS03445 0.70 +1.0 704,447 + +1.3 704,448 - -1.8 704,522 - +2.9 704,562 + +1.9 704,566 + +1.9 704,640 + LU632_RS03450 0.14 +0.0 704,641 - LU632_RS03450 0.14 +0.2 704,641 - LU632_RS03450 0.14 -0.6
Or see this region's nucleotide sequence