Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03370

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03365 and LU632_RS03370 are separated by 53 nucleotidesLU632_RS03370 and LU632_RS03375 are separated by 4 nucleotidesLU632_RS03375 and LU632_RS03380 overlap by 4 nucleotidesLU632_RS03380 and LU632_RS03385 are separated by 213 nucleotides LU632_RS03365: LU632_RS03365 - IS1 family transposase, at 691,656 to 692,353 _RS03365 LU632_RS03370: LU632_RS03370 - integrase, at 692,407 to 692,592 _RS03370 LU632_RS03375: LU632_RS03375 - Fic family protein, at 692,597 to 693,211 _RS03375 LU632_RS03380: LU632_RS03380 - hypothetical protein, at 693,208 to 693,366 _RS03380 LU632_RS03385: LU632_RS03385 - HNH endonuclease, at 693,580 to 693,852 _RS03385 Position (kb) 692 693Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 691.431 kb on + strandat 691.432 kb on - strandat 691.473 kb on + strandat 691.473 kb on + strandat 691.474 kb on - strandat 691.474 kb on - strandat 691.595 kb on + strandat 691.596 kb on - strandat 691.612 kb on + strandat 691.629 kb on + strandat 691.630 kb on - strandat 691.630 kb on - strandat 692.378 kb on + strandat 692.378 kb on + strandat 692.378 kb on + strandat 692.473 kb on + strand, within LU632_RS03370at 692.614 kb on + strandat 692.615 kb on - strandat 692.615 kb on - strandat 692.615 kb on - strandat 692.665 kb on + strand, within LU632_RS03375at 692.666 kb on - strand, within LU632_RS03375at 692.668 kb on + strand, within LU632_RS03375at 692.668 kb on + strand, within LU632_RS03375at 692.742 kb on + strand, within LU632_RS03375at 692.742 kb on + strand, within LU632_RS03375at 692.743 kb on - strand, within LU632_RS03375at 692.785 kb on + strand, within LU632_RS03375at 692.785 kb on + strand, within LU632_RS03375at 692.786 kb on - strand, within LU632_RS03375at 692.822 kb on + strand, within LU632_RS03375at 692.823 kb on - strand, within LU632_RS03375at 692.823 kb on - strand, within LU632_RS03375at 692.856 kb on + strand, within LU632_RS03375at 692.860 kb on + strand, within LU632_RS03375at 692.958 kb on + strand, within LU632_RS03375at 693.167 kb on + strandat 693.168 kb on - strandat 693.168 kb on - strandat 693.168 kb on - strandat 693.196 kb on + strandat 693.197 kb on - strandat 693.197 kb on - strandat 693.198 kb on + strandat 693.199 kb on - strandat 693.199 kb on - strandat 693.399 kb on - strandat 693.474 kb on + strandat 693.527 kb on - strandat 693.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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691,431 + -0.6
691,432 - +0.3
691,473 + -0.7
691,473 + -2.1
691,474 - +2.3
691,474 - +0.7
691,595 + -0.6
691,596 - +0.0
691,612 + +2.5
691,629 + -1.5
691,630 - -0.1
691,630 - -0.8
692,378 + +0.3
692,378 + +2.1
692,378 + +0.3
692,473 + LU632_RS03370 0.35 +1.2
692,614 + +0.4
692,615 - +0.5
692,615 - +1.7
692,615 - +1.0
692,665 + LU632_RS03375 0.11 -0.1
692,666 - LU632_RS03375 0.11 +0.3
692,668 + LU632_RS03375 0.12 -0.0
692,668 + LU632_RS03375 0.12 +0.9
692,742 + LU632_RS03375 0.24 +0.3
692,742 + LU632_RS03375 0.24 +0.5
692,743 - LU632_RS03375 0.24 +0.3
692,785 + LU632_RS03375 0.31 -1.3
692,785 + LU632_RS03375 0.31 -0.7
692,786 - LU632_RS03375 0.31 -0.4
692,822 + LU632_RS03375 0.37 +0.2
692,823 - LU632_RS03375 0.37 +1.4
692,823 - LU632_RS03375 0.37 -1.7
692,856 + LU632_RS03375 0.42 -4.0
692,860 + LU632_RS03375 0.43 +0.5
692,958 + LU632_RS03375 0.59 +1.9
693,167 + +0.8
693,168 - +0.2
693,168 - +0.0
693,168 - -1.3
693,196 + +1.6
693,197 - +0.5
693,197 - +0.6
693,198 + +0.1
693,199 - +0.8
693,199 - +1.1
693,399 - +3.2
693,474 + -0.2
693,527 - +0.7
693,561 - +0.4

Or see this region's nucleotide sequence