Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03295 and LU632_RS03300 are separated by 160 nucleotides LU632_RS03300 and LU632_RS03305 are separated by 65 nucleotides
LU632_RS03295: LU632_RS03295 - aminoimidazole riboside kinase, at 674,885 to 675,802
_RS03295
LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525
_RS03300
LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961
_RS03305
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 675.026 kb on - strand, within LU632_RS03295 at 675.061 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.090 kb on + strand, within LU632_RS03295 at 675.091 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.095 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.104 kb on - strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.175 kb on + strand, within LU632_RS03295 at 675.208 kb on + strand, within LU632_RS03295 at 675.236 kb on - strand, within LU632_RS03295 at 675.463 kb on + strand, within LU632_RS03295 at 675.464 kb on - strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.584 kb on + strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.585 kb on - strand, within LU632_RS03295 at 675.833 kb on - strand at 675.883 kb on - strand at 676.006 kb on + strand at 676.049 kb on + strand at 676.049 kb on + strand at 676.425 kb on + strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.426 kb on - strand, within LU632_RS03300 at 676.512 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.516 kb on - strand, within LU632_RS03300 at 676.710 kb on + strand, within LU632_RS03300 at 676.711 kb on - strand, within LU632_RS03300 at 676.755 kb on + strand, within LU632_RS03300 at 676.756 kb on - strand, within LU632_RS03300 at 676.764 kb on - strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.806 kb on + strand, within LU632_RS03300 at 676.807 kb on + strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.807 kb on - strand, within LU632_RS03300 at 676.847 kb on + strand, within LU632_RS03300 at 676.848 kb on - strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.910 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.971 kb on + strand, within LU632_RS03300 at 676.972 kb on - strand, within LU632_RS03300 at 677.097 kb on + strand, within LU632_RS03300 at 677.143 kb on + strand, within LU632_RS03300 at 677.187 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.258 kb on + strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.259 kb on - strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.262 kb on + strand, within LU632_RS03300 at 677.263 kb on - strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.268 kb on + strand, within LU632_RS03300 at 677.303 kb on + strand, within LU632_RS03300 at 677.325 kb on + strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.328 kb on - strand, within LU632_RS03300 at 677.365 kb on + strand, within LU632_RS03300 at 677.440 kb on - strand at 677.440 kb on - strand at 677.440 kb on - strand at 677.475 kb on - strand at 677.558 kb on + strand at 677.562 kb on + strand at 677.562 kb on + strand at 677.647 kb on + strand at 677.648 kb on - strand at 677.803 kb on + strand, within LU632_RS03305 at 677.924 kb on - strand, within LU632_RS03305 at 677.938 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.027 kb on - strand, within LU632_RS03305 at 678.029 kb on - strand, within LU632_RS03305 at 678.359 kb on - strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.419 kb on - strand, within LU632_RS03305 at 678.489 kb on - strand, within LU632_RS03305 at 678.514 kb on - strand, within LU632_RS03305
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 675,026 - LU632_RS03295 0.15 +0.9 675,061 + LU632_RS03295 0.19 -0.6 675,090 + LU632_RS03295 0.22 +1.9 675,090 + LU632_RS03295 0.22 +0.2 675,090 + LU632_RS03295 0.22 +1.9 675,091 - LU632_RS03295 0.22 +1.3 675,095 - LU632_RS03295 0.23 +0.9 675,095 - LU632_RS03295 0.23 +2.5 675,104 - LU632_RS03295 0.24 +8.9 675,104 - LU632_RS03295 0.24 +3.0 675,104 - LU632_RS03295 0.24 +0.8 675,104 - LU632_RS03295 0.24 +1.8 675,175 + LU632_RS03295 0.32 +2.1 675,175 + LU632_RS03295 0.32 +1.8 675,208 + LU632_RS03295 0.35 +1.6 675,236 - LU632_RS03295 0.38 +1.6 675,463 + LU632_RS03295 0.63 +1.6 675,464 - LU632_RS03295 0.63 +2.8 675,584 + LU632_RS03295 0.76 -2.0 675,584 + LU632_RS03295 0.76 -2.7 675,585 - LU632_RS03295 0.76 +1.5 675,585 - LU632_RS03295 0.76 +0.7 675,833 - -2.2 675,883 - -0.8 676,006 + -2.2 676,049 + -1.0 676,049 + -3.1 676,425 + LU632_RS03300 0.30 +1.0 676,426 - LU632_RS03300 0.30 -2.2 676,426 - LU632_RS03300 0.30 +1.0 676,512 - LU632_RS03300 0.35 -2.3 676,516 - LU632_RS03300 0.35 -1.8 676,516 - LU632_RS03300 0.35 -2.0 676,710 + LU632_RS03300 0.48 -3.6 676,711 - LU632_RS03300 0.48 +0.0 676,755 + LU632_RS03300 0.51 -2.8 676,756 - LU632_RS03300 0.51 -1.2 676,764 - LU632_RS03300 0.51 -1.9 676,806 + LU632_RS03300 0.54 -1.2 676,806 + LU632_RS03300 0.54 -2.2 676,806 + LU632_RS03300 0.54 +0.2 676,807 + LU632_RS03300 0.54 -1.4 676,807 - LU632_RS03300 0.54 -1.8 676,807 - LU632_RS03300 0.54 -3.1 676,807 - LU632_RS03300 0.54 -0.5 676,807 - LU632_RS03300 0.54 -1.6 676,847 + LU632_RS03300 0.57 -0.2 676,848 - LU632_RS03300 0.57 -2.6 676,910 + LU632_RS03300 0.61 -1.2 676,910 + LU632_RS03300 0.61 -3.7 676,971 + LU632_RS03300 0.64 -2.7 676,971 + LU632_RS03300 0.64 -0.1 676,972 - LU632_RS03300 0.65 -3.0 677,097 + LU632_RS03300 0.73 +0.0 677,143 + LU632_RS03300 0.75 -1.5 677,187 + LU632_RS03300 0.78 -0.7 677,258 + LU632_RS03300 0.83 -1.0 677,258 + LU632_RS03300 0.83 -2.1 677,258 + LU632_RS03300 0.83 +0.5 677,259 - LU632_RS03300 0.83 -3.0 677,259 - LU632_RS03300 0.83 +0.0 677,262 + LU632_RS03300 0.83 -1.7 677,262 + LU632_RS03300 0.83 -3.3 677,263 - LU632_RS03300 0.83 -1.2 677,268 + LU632_RS03300 0.83 -1.8 677,268 + LU632_RS03300 0.83 +1.0 677,268 + LU632_RS03300 0.83 -0.7 677,268 + LU632_RS03300 0.83 -0.7 677,268 + LU632_RS03300 0.83 -3.3 677,303 + LU632_RS03300 0.86 -0.9 677,325 + LU632_RS03300 0.87 -2.5 677,328 - LU632_RS03300 0.87 -2.6 677,328 - LU632_RS03300 0.87 -2.2 677,365 + LU632_RS03300 0.90 -1.8 677,440 - -1.7 677,440 - +1.0 677,440 - -1.6 677,475 - -0.9 677,558 + -0.2 677,562 + -1.6 677,562 + -0.6 677,647 + -1.0 677,648 - -1.7 677,803 + LU632_RS03305 0.15 -3.5 677,924 - LU632_RS03305 0.24 -1.3 677,938 + LU632_RS03305 0.25 -2.3 678,026 + LU632_RS03305 0.32 -1.5 678,026 + LU632_RS03305 0.32 -1.9 678,027 - LU632_RS03305 0.32 +1.5 678,029 - LU632_RS03305 0.32 -0.9 678,359 - LU632_RS03305 0.56 -1.3 678,418 + LU632_RS03305 0.60 -1.8 678,418 + LU632_RS03305 0.60 -2.0 678,419 - LU632_RS03305 0.60 -5.5 678,489 - LU632_RS03305 0.65 -0.6 678,514 - LU632_RS03305 0.67 -1.6
Or see this region's nucleotide sequence