Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03295

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03290 and LU632_RS03295 are separated by 340 nucleotidesLU632_RS03295 and LU632_RS03300 are separated by 160 nucleotides LU632_RS03290: LU632_RS03290 - diguanylate cyclase, at 672,631 to 674,544 _RS03290 LU632_RS03295: LU632_RS03295 - aminoimidazole riboside kinase, at 674,885 to 675,802 _RS03295 LU632_RS03300: LU632_RS03300 - carbohydrate porin, at 675,963 to 677,525 _RS03300 Position (kb) 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 674.033 kb on - strand, within LU632_RS03290at 674.078 kb on + strand, within LU632_RS03290at 674.280 kb on + strand, within LU632_RS03290at 674.281 kb on - strand, within LU632_RS03290at 674.664 kb on + strandat 674.711 kb on + strandat 674.711 kb on + strandat 674.711 kb on + strandat 674.712 kb on - strandat 674.714 kb on + strandat 674.758 kb on + strandat 674.759 kb on - strandat 674.815 kb on - strandat 674.955 kb on + strandat 675.026 kb on - strand, within LU632_RS03295at 675.061 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.090 kb on + strand, within LU632_RS03295at 675.091 kb on - strand, within LU632_RS03295at 675.095 kb on - strand, within LU632_RS03295at 675.095 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.104 kb on - strand, within LU632_RS03295at 675.175 kb on + strand, within LU632_RS03295at 675.175 kb on + strand, within LU632_RS03295at 675.208 kb on + strand, within LU632_RS03295at 675.236 kb on - strand, within LU632_RS03295at 675.463 kb on + strand, within LU632_RS03295at 675.464 kb on - strand, within LU632_RS03295at 675.584 kb on + strand, within LU632_RS03295at 675.584 kb on + strand, within LU632_RS03295at 675.585 kb on - strand, within LU632_RS03295at 675.585 kb on - strand, within LU632_RS03295at 675.833 kb on - strandat 675.883 kb on - strandat 676.006 kb on + strandat 676.049 kb on + strandat 676.049 kb on + strandat 676.425 kb on + strand, within LU632_RS03300at 676.426 kb on - strand, within LU632_RS03300at 676.426 kb on - strand, within LU632_RS03300at 676.512 kb on - strand, within LU632_RS03300at 676.516 kb on - strand, within LU632_RS03300at 676.516 kb on - strand, within LU632_RS03300at 676.710 kb on + strand, within LU632_RS03300at 676.711 kb on - strand, within LU632_RS03300at 676.755 kb on + strand, within LU632_RS03300at 676.756 kb on - strand, within LU632_RS03300at 676.764 kb on - strand, within LU632_RS03300

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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674,033 - LU632_RS03290 0.73 +0.4
674,078 + LU632_RS03290 0.76 -0.6
674,280 + LU632_RS03290 0.86 +0.9
674,281 - LU632_RS03290 0.86 +2.0
674,664 + +0.0
674,711 + -0.5
674,711 + -0.4
674,711 + +0.1
674,712 - +0.1
674,714 + -1.8
674,758 + -3.6
674,759 - -1.0
674,815 - +0.7
674,955 + +2.0
675,026 - LU632_RS03295 0.15 +0.9
675,061 + LU632_RS03295 0.19 -0.6
675,090 + LU632_RS03295 0.22 +1.9
675,090 + LU632_RS03295 0.22 +0.2
675,090 + LU632_RS03295 0.22 +1.9
675,091 - LU632_RS03295 0.22 +1.3
675,095 - LU632_RS03295 0.23 +0.9
675,095 - LU632_RS03295 0.23 +2.5
675,104 - LU632_RS03295 0.24 +8.9
675,104 - LU632_RS03295 0.24 +3.0
675,104 - LU632_RS03295 0.24 +0.8
675,104 - LU632_RS03295 0.24 +1.8
675,175 + LU632_RS03295 0.32 +2.1
675,175 + LU632_RS03295 0.32 +1.8
675,208 + LU632_RS03295 0.35 +1.6
675,236 - LU632_RS03295 0.38 +1.6
675,463 + LU632_RS03295 0.63 +1.6
675,464 - LU632_RS03295 0.63 +2.8
675,584 + LU632_RS03295 0.76 -2.0
675,584 + LU632_RS03295 0.76 -2.7
675,585 - LU632_RS03295 0.76 +1.5
675,585 - LU632_RS03295 0.76 +0.7
675,833 - -2.2
675,883 - -0.8
676,006 + -2.2
676,049 + -1.0
676,049 + -3.1
676,425 + LU632_RS03300 0.30 +1.0
676,426 - LU632_RS03300 0.30 -2.2
676,426 - LU632_RS03300 0.30 +1.0
676,512 - LU632_RS03300 0.35 -2.3
676,516 - LU632_RS03300 0.35 -1.8
676,516 - LU632_RS03300 0.35 -2.0
676,710 + LU632_RS03300 0.48 -3.6
676,711 - LU632_RS03300 0.48 +0.0
676,755 + LU632_RS03300 0.51 -2.8
676,756 - LU632_RS03300 0.51 -1.2
676,764 - LU632_RS03300 0.51 -1.9

Or see this region's nucleotide sequence