Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03200 and LU632_RS03205 are separated by 240 nucleotides LU632_RS03205 and LU632_RS03210 are separated by 67 nucleotides LU632_RS03210 and sctJ are separated by 5 nucleotides sctJ and LU632_RS03220 overlap by 8 nucleotides
LU632_RS03200: LU632_RS03200 - sigma-54 dependent transcriptional regulator, at 655,613 to 656,590
_RS03200
LU632_RS03205: LU632_RS03205 - hypothetical protein, at 656,831 to 657,034
_RS03205
LU632_RS03210: LU632_RS03210 - EscI/YscI/HrpB family type III secretion system inner rod protein, at 657,102 to 657,467
_RS03210
LU632_RS03215: sctJ - type III secretion inner membrane ring lipoprotein SctJ, at 657,473 to 658,249
sctJ
LU632_RS03220: LU632_RS03220 - hypothetical protein, at 658,242 to 658,832
_RS03220
Position (kb) 657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 656.153 kb on + strand, within LU632_RS03200 at 656.153 kb on + strand, within LU632_RS03200 at 656.153 kb on + strand, within LU632_RS03200 at 656.165 kb on - strand, within LU632_RS03200 at 656.165 kb on - strand, within LU632_RS03200 at 656.215 kb on + strand, within LU632_RS03200 at 656.215 kb on + strand, within LU632_RS03200 at 656.216 kb on - strand, within LU632_RS03200 at 656.230 kb on + strand, within LU632_RS03200 at 656.314 kb on + strand, within LU632_RS03200 at 656.314 kb on + strand, within LU632_RS03200 at 656.559 kb on + strand at 656.559 kb on + strand at 656.560 kb on - strand at 656.578 kb on + strand at 656.578 kb on + strand at 656.578 kb on + strand at 656.579 kb on - strand at 656.579 kb on - strand at 656.671 kb on + strand at 656.672 kb on - strand at 656.672 kb on - strand at 656.767 kb on + strand at 656.767 kb on + strand at 656.767 kb on + strand at 656.768 kb on - strand at 656.770 kb on + strand at 656.772 kb on + strand at 656.805 kb on + strand at 656.862 kb on + strand, within LU632_RS03205 at 656.950 kb on + strand, within LU632_RS03205 at 656.951 kb on - strand, within LU632_RS03205 at 656.961 kb on + strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 657.017 kb on - strand at 657.152 kb on + strand, within LU632_RS03210 at 657.211 kb on + strand, within LU632_RS03210 at 657.269 kb on + strand, within LU632_RS03210 at 657.478 kb on + strand at 657.479 kb on - strand at 657.504 kb on + strand at 657.504 kb on + strand at 657.610 kb on + strand, within sctJ at 657.684 kb on + strand, within sctJ at 657.684 kb on + strand, within sctJ at 657.685 kb on - strand, within sctJ at 657.688 kb on + strand, within sctJ at 657.689 kb on - strand, within sctJ at 657.689 kb on - strand, within sctJ at 657.728 kb on - strand, within sctJ at 657.797 kb on + strand, within sctJ at 657.797 kb on + strand, within sctJ at 657.798 kb on - strand, within sctJ at 657.798 kb on - strand, within sctJ at 657.928 kb on + strand, within sctJ at 657.931 kb on + strand, within sctJ at 657.931 kb on + strand, within sctJ at 657.932 kb on - strand, within sctJ at 657.973 kb on + strand, within sctJ at 657.974 kb on - strand, within sctJ at 658.061 kb on + strand, within sctJ at 658.062 kb on - strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.099 kb on + strand, within sctJ at 658.100 kb on - strand, within sctJ at 658.100 kb on - strand, within sctJ at 658.148 kb on - strand, within sctJ at 658.182 kb on + strand at 658.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 656,153 + LU632_RS03200 0.55 +3.0 656,153 + LU632_RS03200 0.55 +4.4 656,153 + LU632_RS03200 0.55 +5.3 656,165 - LU632_RS03200 0.56 +7.4 656,165 - LU632_RS03200 0.56 +2.9 656,215 + LU632_RS03200 0.62 +7.0 656,215 + LU632_RS03200 0.62 -2.7 656,216 - LU632_RS03200 0.62 +2.5 656,230 + LU632_RS03200 0.63 +3.6 656,314 + LU632_RS03200 0.72 +8.1 656,314 + LU632_RS03200 0.72 +4.9 656,559 + -0.7 656,559 + +2.4 656,560 - -2.0 656,578 + -0.2 656,578 + +1.0 656,578 + +3.3 656,579 - -1.3 656,579 - -2.3 656,671 + -0.5 656,672 - -0.3 656,672 - -1.3 656,767 + -1.6 656,767 + +1.2 656,767 + -0.9 656,768 - -0.0 656,770 + -2.3 656,772 + -2.2 656,805 + -1.4 656,862 + LU632_RS03205 0.15 -1.2 656,950 + LU632_RS03205 0.58 -2.3 656,951 - LU632_RS03205 0.59 -0.7 656,961 + LU632_RS03205 0.64 +0.0 656,962 - LU632_RS03205 0.64 -1.0 656,962 - LU632_RS03205 0.64 +2.0 656,962 - LU632_RS03205 0.64 -1.7 656,962 - LU632_RS03205 0.64 +1.3 657,017 - +1.3 657,152 + LU632_RS03210 0.14 -1.6 657,211 + LU632_RS03210 0.30 -2.2 657,269 + LU632_RS03210 0.46 +0.5 657,478 + +3.0 657,479 - -0.8 657,504 + +1.2 657,504 + +0.6 657,610 + sctJ LU632_RS03215 0.18 +1.7 657,684 + sctJ LU632_RS03215 0.27 +0.3 657,684 + sctJ LU632_RS03215 0.27 -0.6 657,685 - sctJ LU632_RS03215 0.27 -0.1 657,688 + sctJ LU632_RS03215 0.28 +3.4 657,689 - sctJ LU632_RS03215 0.28 +1.4 657,689 - sctJ LU632_RS03215 0.28 -0.6 657,728 - sctJ LU632_RS03215 0.33 -0.9 657,797 + sctJ LU632_RS03215 0.42 -0.4 657,797 + sctJ LU632_RS03215 0.42 -1.9 657,798 - sctJ LU632_RS03215 0.42 +1.7 657,798 - sctJ LU632_RS03215 0.42 +0.2 657,928 + sctJ LU632_RS03215 0.59 -0.7 657,931 + sctJ LU632_RS03215 0.59 +0.0 657,931 + sctJ LU632_RS03215 0.59 -0.2 657,932 - sctJ LU632_RS03215 0.59 -1.8 657,973 + sctJ LU632_RS03215 0.64 +2.6 657,974 - sctJ LU632_RS03215 0.64 -2.5 658,061 + sctJ LU632_RS03215 0.76 +0.6 658,062 - sctJ LU632_RS03215 0.76 -1.3 658,099 + sctJ LU632_RS03215 0.81 +0.0 658,099 + sctJ LU632_RS03215 0.81 +1.0 658,099 + sctJ LU632_RS03215 0.81 -1.6 658,100 - sctJ LU632_RS03215 0.81 +1.1 658,100 - sctJ LU632_RS03215 0.81 +1.0 658,148 - sctJ LU632_RS03215 0.87 -0.1 658,182 + -2.0 658,183 - +0.3
Or see this region's nucleotide sequence