Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03195 and LU632_RS03200 are separated by 359 nucleotides LU632_RS03200 and LU632_RS03205 are separated by 240 nucleotides LU632_RS03205 and LU632_RS03210 are separated by 67 nucleotides LU632_RS03210 and sctJ are separated by 5 nucleotides
LU632_RS03190: LU632_RS03190 - PAS domain-containing sensor histidine kinase, at 653,120 to 654,619
_RS03190
LU632_RS03195: LU632_RS03195 - response regulator transcription factor, at 654,612 to 655,253
_RS03195
LU632_RS03200: LU632_RS03200 - sigma-54 dependent transcriptional regulator, at 655,613 to 656,590
_RS03200
LU632_RS03205: LU632_RS03205 - hypothetical protein, at 656,831 to 657,034
_RS03205
LU632_RS03210: LU632_RS03210 - EscI/YscI/HrpB family type III secretion system inner rod protein, at 657,102 to 657,467
_RS03210
LU632_RS03215: sctJ - type III secretion inner membrane ring lipoprotein SctJ, at 657,473 to 658,249
sctJ
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 654.617 kb on + strand at 654.621 kb on - strand at 654.621 kb on - strand at 654.788 kb on + strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.824 kb on + strand, within LU632_RS03195 at 654.825 kb on - strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.871 kb on - strand, within LU632_RS03195 at 654.927 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.121 kb on + strand, within LU632_RS03195 at 655.152 kb on - strand, within LU632_RS03195 at 655.214 kb on + strand at 655.225 kb on - strand at 655.225 kb on - strand at 655.231 kb on + strand at 655.258 kb on - strand at 655.264 kb on - strand at 655.271 kb on + strand at 655.272 kb on - strand at 655.344 kb on + strand at 655.442 kb on - strand at 655.442 kb on - strand at 655.485 kb on - strand at 655.527 kb on + strand at 655.550 kb on + strand at 655.613 kb on - strand at 655.700 kb on - strand at 655.700 kb on - strand at 655.701 kb on + strand at 655.701 kb on + strand at 655.701 kb on + strand at 655.701 kb on + strand at 655.701 kb on + strand at 655.701 kb on + strand at 655.702 kb on - strand at 655.702 kb on - strand at 655.702 kb on - strand at 655.702 kb on - strand at 655.702 kb on - strand at 655.911 kb on - strand, within LU632_RS03200 at 655.990 kb on + strand, within LU632_RS03200 at 655.991 kb on - strand, within LU632_RS03200 at 656.012 kb on - strand, within LU632_RS03200 at 656.012 kb on - strand, within LU632_RS03200 at 656.035 kb on + strand, within LU632_RS03200 at 656.153 kb on + strand, within LU632_RS03200 at 656.153 kb on + strand, within LU632_RS03200 at 656.153 kb on + strand, within LU632_RS03200 at 656.165 kb on - strand, within LU632_RS03200 at 656.165 kb on - strand, within LU632_RS03200 at 656.215 kb on + strand, within LU632_RS03200 at 656.215 kb on + strand, within LU632_RS03200 at 656.216 kb on - strand, within LU632_RS03200 at 656.230 kb on + strand, within LU632_RS03200 at 656.314 kb on + strand, within LU632_RS03200 at 656.314 kb on + strand, within LU632_RS03200 at 656.559 kb on + strand at 656.559 kb on + strand at 656.560 kb on - strand at 656.578 kb on + strand at 656.578 kb on + strand at 656.578 kb on + strand at 656.579 kb on - strand at 656.579 kb on - strand at 656.671 kb on + strand at 656.672 kb on - strand at 656.672 kb on - strand at 656.767 kb on + strand at 656.767 kb on + strand at 656.767 kb on + strand at 656.768 kb on - strand at 656.770 kb on + strand at 656.772 kb on + strand at 656.805 kb on + strand at 656.862 kb on + strand, within LU632_RS03205 at 656.950 kb on + strand, within LU632_RS03205 at 656.951 kb on - strand, within LU632_RS03205 at 656.961 kb on + strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 656.962 kb on - strand, within LU632_RS03205 at 657.017 kb on - strand at 657.152 kb on + strand, within LU632_RS03210 at 657.211 kb on + strand, within LU632_RS03210 at 657.269 kb on + strand, within LU632_RS03210 at 657.478 kb on + strand at 657.479 kb on - strand at 657.504 kb on + strand at 657.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 654,617 + +5.0 654,621 - +3.9 654,621 - +1.1 654,788 + LU632_RS03195 0.27 +1.8 654,789 - LU632_RS03195 0.28 +2.9 654,789 - LU632_RS03195 0.28 +3.0 654,789 - LU632_RS03195 0.28 +3.1 654,789 - LU632_RS03195 0.28 +3.1 654,824 + LU632_RS03195 0.33 +7.5 654,825 - LU632_RS03195 0.33 +3.0 654,870 + LU632_RS03195 0.40 +0.5 654,870 + LU632_RS03195 0.40 -0.8 654,870 + LU632_RS03195 0.40 +0.0 654,871 - LU632_RS03195 0.40 +3.5 654,927 - LU632_RS03195 0.49 +3.1 655,033 - LU632_RS03195 0.66 +2.3 655,033 - LU632_RS03195 0.66 -1.3 655,033 - LU632_RS03195 0.66 +3.5 655,121 + LU632_RS03195 0.79 +1.0 655,152 - LU632_RS03195 0.84 -1.8 655,214 + +1.8 655,225 - +5.4 655,225 - +3.3 655,231 + +3.9 655,258 - -2.2 655,264 - +3.7 655,271 + +3.6 655,272 - +2.4 655,344 + -1.0 655,442 - +1.1 655,442 - +2.4 655,485 - +2.3 655,527 + -2.4 655,550 + +3.0 655,613 - +4.4 655,700 - -1.9 655,700 - +4.4 655,701 + +3.1 655,701 + +2.6 655,701 + +1.9 655,701 + +3.9 655,701 + +5.4 655,701 + +2.7 655,702 - +5.4 655,702 - -0.4 655,702 - +6.6 655,702 - +2.8 655,702 - +2.9 655,911 - LU632_RS03200 0.30 +5.8 655,990 + LU632_RS03200 0.39 +1.1 655,991 - LU632_RS03200 0.39 +3.6 656,012 - LU632_RS03200 0.41 +2.0 656,012 - LU632_RS03200 0.41 +3.4 656,035 + LU632_RS03200 0.43 +6.3 656,153 + LU632_RS03200 0.55 +3.0 656,153 + LU632_RS03200 0.55 +4.4 656,153 + LU632_RS03200 0.55 +5.3 656,165 - LU632_RS03200 0.56 +7.4 656,165 - LU632_RS03200 0.56 +2.9 656,215 + LU632_RS03200 0.62 +7.0 656,215 + LU632_RS03200 0.62 -2.7 656,216 - LU632_RS03200 0.62 +2.5 656,230 + LU632_RS03200 0.63 +3.6 656,314 + LU632_RS03200 0.72 +8.1 656,314 + LU632_RS03200 0.72 +4.9 656,559 + -0.7 656,559 + +2.4 656,560 - -2.0 656,578 + -0.2 656,578 + +1.0 656,578 + +3.3 656,579 - -1.3 656,579 - -2.3 656,671 + -0.5 656,672 - -0.3 656,672 - -1.3 656,767 + -1.6 656,767 + +1.2 656,767 + -0.9 656,768 - -0.0 656,770 + -2.3 656,772 + -2.2 656,805 + -1.4 656,862 + LU632_RS03205 0.15 -1.2 656,950 + LU632_RS03205 0.58 -2.3 656,951 - LU632_RS03205 0.59 -0.7 656,961 + LU632_RS03205 0.64 +0.0 656,962 - LU632_RS03205 0.64 -1.0 656,962 - LU632_RS03205 0.64 +2.0 656,962 - LU632_RS03205 0.64 -1.7 656,962 - LU632_RS03205 0.64 +1.3 657,017 - +1.3 657,152 + LU632_RS03210 0.14 -1.6 657,211 + LU632_RS03210 0.30 -2.2 657,269 + LU632_RS03210 0.46 +0.5 657,478 + +3.0 657,479 - -0.8 657,504 + +1.2 657,504 + +0.6
Or see this region's nucleotide sequence