Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sctW and LU632_RS03185 are separated by 276 nucleotides LU632_RS03185 and LU632_RS03190 are separated by 144 nucleotides LU632_RS03190 and LU632_RS03195 overlap by 8 nucleotides LU632_RS03195 and LU632_RS03200 are separated by 359 nucleotides
LU632_RS03180: sctW - type III secretion system gatekeeper subunit SctW, at 650,984 to 652,150
sctW
LU632_RS03185: LU632_RS03185 - sigma-70 family RNA polymerase sigma factor, at 652,427 to 652,975
_RS03185
LU632_RS03190: LU632_RS03190 - PAS domain-containing sensor histidine kinase, at 653,120 to 654,619
_RS03190
LU632_RS03195: LU632_RS03195 - response regulator transcription factor, at 654,612 to 655,253
_RS03195
LU632_RS03200: LU632_RS03200 - sigma-54 dependent transcriptional regulator, at 655,613 to 656,590
_RS03200
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 652.132 kb on + strand at 652.166 kb on + strand at 652.166 kb on + strand at 652.167 kb on - strand at 652.167 kb on - strand at 652.258 kb on - strand at 652.413 kb on + strand at 652.427 kb on - strand at 652.474 kb on + strand at 652.475 kb on - strand at 652.530 kb on + strand, within LU632_RS03185 at 652.531 kb on - strand, within LU632_RS03185 at 652.584 kb on + strand, within LU632_RS03185 at 652.606 kb on - strand, within LU632_RS03185 at 652.877 kb on + strand, within LU632_RS03185 at 652.877 kb on + strand, within LU632_RS03185 at 652.878 kb on - strand, within LU632_RS03185 at 652.965 kb on + strand at 652.966 kb on - strand at 653.207 kb on + strand at 653.237 kb on + strand at 653.237 kb on + strand at 653.271 kb on - strand, within LU632_RS03190 at 653.272 kb on + strand, within LU632_RS03190 at 653.273 kb on - strand, within LU632_RS03190 at 653.336 kb on - strand, within LU632_RS03190 at 653.336 kb on - strand, within LU632_RS03190 at 653.344 kb on + strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.345 kb on - strand, within LU632_RS03190 at 653.460 kb on - strand, within LU632_RS03190 at 653.474 kb on + strand, within LU632_RS03190 at 653.474 kb on + strand, within LU632_RS03190 at 653.475 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.514 kb on - strand, within LU632_RS03190 at 653.578 kb on + strand, within LU632_RS03190 at 653.597 kb on - strand, within LU632_RS03190 at 653.605 kb on + strand, within LU632_RS03190 at 653.615 kb on + strand, within LU632_RS03190 at 653.675 kb on - strand, within LU632_RS03190 at 653.675 kb on - strand, within LU632_RS03190 at 653.717 kb on - strand, within LU632_RS03190 at 653.717 kb on - strand, within LU632_RS03190 at 653.857 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 653.937 kb on + strand, within LU632_RS03190 at 654.046 kb on + strand, within LU632_RS03190 at 654.239 kb on - strand, within LU632_RS03190 at 654.340 kb on + strand, within LU632_RS03190 at 654.410 kb on - strand, within LU632_RS03190 at 654.460 kb on + strand, within LU632_RS03190 at 654.461 kb on - strand, within LU632_RS03190 at 654.584 kb on - strand at 654.608 kb on + strand at 654.608 kb on + strand at 654.617 kb on + strand at 654.621 kb on - strand at 654.621 kb on - strand at 654.788 kb on + strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.789 kb on - strand, within LU632_RS03195 at 654.824 kb on + strand, within LU632_RS03195 at 654.825 kb on - strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.870 kb on + strand, within LU632_RS03195 at 654.871 kb on - strand, within LU632_RS03195 at 654.927 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.033 kb on - strand, within LU632_RS03195 at 655.121 kb on + strand, within LU632_RS03195 at 655.152 kb on - strand, within LU632_RS03195 at 655.214 kb on + strand at 655.225 kb on - strand at 655.225 kb on - strand at 655.231 kb on + strand at 655.258 kb on - strand at 655.264 kb on - strand at 655.271 kb on + strand at 655.272 kb on - strand at 655.344 kb on + strand at 655.442 kb on - strand at 655.442 kb on - strand at 655.485 kb on - strand at 655.527 kb on + strand at 655.550 kb on + strand at 655.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 652,132 + +0.7 652,166 + +2.6 652,166 + +3.2 652,167 - +2.6 652,167 - -0.3 652,258 - +3.2 652,413 + -1.3 652,427 - +4.5 652,474 + +0.9 652,475 - +2.1 652,530 + LU632_RS03185 0.19 +1.0 652,531 - LU632_RS03185 0.19 +3.1 652,584 + LU632_RS03185 0.29 -1.0 652,606 - LU632_RS03185 0.33 +1.8 652,877 + LU632_RS03185 0.82 -0.6 652,877 + LU632_RS03185 0.82 -1.0 652,878 - LU632_RS03185 0.82 +4.4 652,965 + +4.2 652,966 - -0.6 653,207 + +1.8 653,237 + +1.0 653,237 + +1.0 653,271 - LU632_RS03190 0.10 +3.1 653,272 + LU632_RS03190 0.10 +2.2 653,273 - LU632_RS03190 0.10 -1.0 653,336 - LU632_RS03190 0.14 +0.7 653,336 - LU632_RS03190 0.14 -1.3 653,344 + LU632_RS03190 0.15 +3.4 653,345 - LU632_RS03190 0.15 +2.8 653,345 - LU632_RS03190 0.15 +3.5 653,345 - LU632_RS03190 0.15 +2.0 653,345 - LU632_RS03190 0.15 +3.0 653,345 - LU632_RS03190 0.15 +0.0 653,460 - LU632_RS03190 0.23 +0.5 653,474 + LU632_RS03190 0.24 +4.0 653,474 + LU632_RS03190 0.24 +2.9 653,475 - LU632_RS03190 0.24 +2.8 653,514 - LU632_RS03190 0.26 +6.6 653,514 - LU632_RS03190 0.26 +3.4 653,514 - LU632_RS03190 0.26 +3.3 653,578 + LU632_RS03190 0.31 +2.5 653,597 - LU632_RS03190 0.32 +2.7 653,605 + LU632_RS03190 0.32 +2.5 653,615 + LU632_RS03190 0.33 +5.3 653,675 - LU632_RS03190 0.37 +0.0 653,675 - LU632_RS03190 0.37 +1.4 653,717 - LU632_RS03190 0.40 +2.2 653,717 - LU632_RS03190 0.40 -3.0 653,857 + LU632_RS03190 0.49 +3.6 653,937 + LU632_RS03190 0.54 +1.9 653,937 + LU632_RS03190 0.54 +2.4 653,937 + LU632_RS03190 0.54 +3.1 653,937 + LU632_RS03190 0.54 -1.6 653,937 + LU632_RS03190 0.54 +3.4 654,046 + LU632_RS03190 0.62 +1.5 654,239 - LU632_RS03190 0.75 +4.5 654,340 + LU632_RS03190 0.81 +3.2 654,410 - LU632_RS03190 0.86 +1.5 654,460 + LU632_RS03190 0.89 +3.3 654,461 - LU632_RS03190 0.89 +3.1 654,584 - +3.1 654,608 + -0.1 654,608 + +2.0 654,617 + +5.0 654,621 - +3.9 654,621 - +1.1 654,788 + LU632_RS03195 0.27 +1.8 654,789 - LU632_RS03195 0.28 +2.9 654,789 - LU632_RS03195 0.28 +3.0 654,789 - LU632_RS03195 0.28 +3.1 654,789 - LU632_RS03195 0.28 +3.1 654,824 + LU632_RS03195 0.33 +7.5 654,825 - LU632_RS03195 0.33 +3.0 654,870 + LU632_RS03195 0.40 +0.5 654,870 + LU632_RS03195 0.40 -0.8 654,870 + LU632_RS03195 0.40 +0.0 654,871 - LU632_RS03195 0.40 +3.5 654,927 - LU632_RS03195 0.49 +3.1 655,033 - LU632_RS03195 0.66 +2.3 655,033 - LU632_RS03195 0.66 -1.3 655,033 - LU632_RS03195 0.66 +3.5 655,121 + LU632_RS03195 0.79 +1.0 655,152 - LU632_RS03195 0.84 -1.8 655,214 + +1.8 655,225 - +5.4 655,225 - +3.3 655,231 + +3.9 655,258 - -2.2 655,264 - +3.7 655,271 + +3.6 655,272 - +2.4 655,344 + -1.0 655,442 - +1.1 655,442 - +2.4 655,485 - +2.3 655,527 + -2.4 655,550 + +3.0 655,613 - +4.4
Or see this region's nucleotide sequence