Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03110 and LU632_RS03115 are separated by 87 nucleotides LU632_RS03115 and LU632_RS03120 are separated by 341 nucleotides
LU632_RS03110: LU632_RS03110 - type III effector HrpK, at 637,433 to 639,808
_RS03110
LU632_RS03115: LU632_RS03115 - hypothetical protein, at 639,896 to 640,225
_RS03115
LU632_RS03120: LU632_RS03120 - acyl-CoA thioesterase, at 640,567 to 640,950
_RS03120
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 638.910 kb on - strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 639.066 kb on - strand, within LU632_RS03110 at 639.143 kb on + strand, within LU632_RS03110 at 639.480 kb on + strand, within LU632_RS03110 at 639.481 kb on - strand, within LU632_RS03110 at 639.525 kb on + strand, within LU632_RS03110 at 639.674 kb on - strand at 639.730 kb on + strand at 639.844 kb on - strand at 639.865 kb on - strand at 639.865 kb on - strand at 639.901 kb on + strand at 639.901 kb on + strand at 639.928 kb on + strand at 639.962 kb on - strand, within LU632_RS03115 at 640.030 kb on + strand, within LU632_RS03115 at 640.186 kb on + strand, within LU632_RS03115 at 640.226 kb on - strand at 640.316 kb on - strand at 640.332 kb on - strand at 640.460 kb on + strand at 640.520 kb on + strand at 640.520 kb on + strand at 640.525 kb on - strand at 640.669 kb on + strand, within LU632_RS03120 at 640.774 kb on - strand, within LU632_RS03120 at 640.788 kb on + strand, within LU632_RS03120 at 640.788 kb on + strand, within LU632_RS03120 at 640.845 kb on + strand, within LU632_RS03120 at 640.845 kb on + strand, within LU632_RS03120 at 640.846 kb on - strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.884 kb on - strand, within LU632_RS03120 at 640.935 kb on - strand at 641.010 kb on + strand at 641.039 kb on + strand at 641.056 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 638,910 - LU632_RS03110 0.62 -0.2 638,958 + LU632_RS03110 0.64 +0.3 638,958 + LU632_RS03110 0.64 +4.1 638,958 + LU632_RS03110 0.64 +0.9 638,958 + LU632_RS03110 0.64 +0.6 638,959 - LU632_RS03110 0.64 +0.8 638,959 - LU632_RS03110 0.64 +0.1 638,959 - LU632_RS03110 0.64 +0.0 638,959 - LU632_RS03110 0.64 -0.6 639,066 - LU632_RS03110 0.69 -2.3 639,143 + LU632_RS03110 0.72 +0.4 639,480 + LU632_RS03110 0.86 +0.8 639,481 - LU632_RS03110 0.86 -0.6 639,525 + LU632_RS03110 0.88 -0.9 639,674 - +1.0 639,730 + -2.3 639,844 - +2.6 639,865 - -0.4 639,865 - -0.2 639,901 + -0.3 639,901 + -1.0 639,928 + +0.7 639,962 - LU632_RS03115 0.20 +1.8 640,030 + LU632_RS03115 0.41 +1.7 640,186 + LU632_RS03115 0.88 -0.1 640,226 - -0.6 640,316 - -0.6 640,332 - +2.8 640,460 + -0.2 640,520 + -0.4 640,520 + +0.0 640,525 - +3.7 640,669 + LU632_RS03120 0.27 +0.3 640,774 - LU632_RS03120 0.54 -1.4 640,788 + LU632_RS03120 0.58 -0.3 640,788 + LU632_RS03120 0.58 +0.8 640,845 + LU632_RS03120 0.72 -0.1 640,845 + LU632_RS03120 0.72 -0.3 640,846 - LU632_RS03120 0.73 +0.2 640,847 + LU632_RS03120 0.73 -3.4 640,847 + LU632_RS03120 0.73 -0.6 640,847 + LU632_RS03120 0.73 +0.6 640,847 + LU632_RS03120 0.73 -0.6 640,848 - LU632_RS03120 0.73 +0.0 640,848 - LU632_RS03120 0.73 +0.7 640,848 - LU632_RS03120 0.73 -0.3 640,884 - LU632_RS03120 0.83 +0.6 640,935 - +0.0 641,010 + +0.0 641,039 + -0.8 641,056 + +2.9 641,156 + -0.7 641,156 + +0.8 641,156 + -1.0 641,156 + -0.6 641,156 + -3.3 641,156 + +1.6 641,157 - -0.1 641,157 - -0.4 641,157 - -2.0 641,157 - -0.7 641,210 - +2.9
Or see this region's nucleotide sequence