Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sgrR and LU632_RS02845 are separated by 261 nucleotides LU632_RS02845 and LU632_RS02850 are separated by 127 nucleotides LU632_RS02850 and LU632_RS02855 are separated by 152 nucleotides
LU632_RS02840: sgrR - HTH-type transcriptional regulator SgrR, at 578,079 to 579,740
sgrR
LU632_RS02845: LU632_RS02845 - MFS transporter, at 580,002 to 581,180
_RS02845
LU632_RS02850: LU632_RS02850 - hypothetical protein, at 581,308 to 581,478
_RS02850
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
Position (kb) 580
581
582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 579.049 kb on + strand, within sgrR at 579.049 kb on + strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.050 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.054 kb on - strand, within sgrR at 579.087 kb on - strand, within sgrR at 579.101 kb on - strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.269 kb on + strand, within sgrR at 579.365 kb on - strand, within sgrR at 579.624 kb on - strand at 579.785 kb on + strand at 579.785 kb on + strand at 579.786 kb on - strand at 579.786 kb on - strand at 579.849 kb on + strand at 579.897 kb on + strand at 579.958 kb on + strand at 579.967 kb on + strand at 579.967 kb on + strand at 580.056 kb on - strand at 580.071 kb on - strand at 580.167 kb on - strand, within LU632_RS02845 at 580.361 kb on + strand, within LU632_RS02845 at 580.362 kb on - strand, within LU632_RS02845 at 580.436 kb on + strand, within LU632_RS02845 at 580.437 kb on - strand, within LU632_RS02845 at 580.504 kb on - strand, within LU632_RS02845 at 580.661 kb on - strand, within LU632_RS02845 at 580.692 kb on - strand, within LU632_RS02845 at 580.765 kb on + strand, within LU632_RS02845 at 580.821 kb on + strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.848 kb on - strand, within LU632_RS02845 at 580.928 kb on - strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.930 kb on + strand, within LU632_RS02845 at 580.996 kb on + strand, within LU632_RS02845 at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.214 kb on + strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.215 kb on - strand at 581.262 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.278 kb on + strand at 581.279 kb on - strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.282 kb on + strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.283 kb on - strand at 581.427 kb on + strand, within LU632_RS02850 at 581.476 kb on + strand at 581.476 kb on + strand at 581.476 kb on + strand at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 579,049 + sgrR LU632_RS02840 0.58 +0.5 579,049 + sgrR LU632_RS02840 0.58 -1.1 579,050 - sgrR LU632_RS02840 0.58 +0.3 579,050 - sgrR LU632_RS02840 0.58 +1.3 579,054 - sgrR LU632_RS02840 0.59 +0.3 579,054 - sgrR LU632_RS02840 0.59 +0.9 579,087 - sgrR LU632_RS02840 0.61 +0.4 579,101 - sgrR LU632_RS02840 0.61 -1.3 579,269 + sgrR LU632_RS02840 0.72 -0.7 579,269 + sgrR LU632_RS02840 0.72 -0.1 579,365 - sgrR LU632_RS02840 0.77 +0.3 579,624 - -0.9 579,785 + -2.5 579,785 + +0.7 579,786 - -0.1 579,786 - -0.6 579,849 + -0.7 579,897 + +2.4 579,958 + -2.1 579,967 + +0.7 579,967 + -1.7 580,056 - -1.6 580,071 - +0.8 580,167 - LU632_RS02845 0.14 +0.8 580,361 + LU632_RS02845 0.30 -2.1 580,362 - LU632_RS02845 0.31 +0.4 580,436 + LU632_RS02845 0.37 -1.3 580,437 - LU632_RS02845 0.37 +2.1 580,504 - LU632_RS02845 0.43 -0.5 580,661 - LU632_RS02845 0.56 +1.0 580,692 - LU632_RS02845 0.59 +2.3 580,765 + LU632_RS02845 0.65 +0.1 580,821 + LU632_RS02845 0.69 +1.8 580,848 - LU632_RS02845 0.72 +0.2 580,848 - LU632_RS02845 0.72 -1.1 580,928 - LU632_RS02845 0.79 -0.3 580,930 + LU632_RS02845 0.79 -0.7 580,930 + LU632_RS02845 0.79 -0.5 580,996 + LU632_RS02845 0.84 -0.7 581,214 + +1.0 581,214 + +1.1 581,214 + -0.9 581,214 + -1.3 581,215 - +1.4 581,215 - +0.9 581,215 - +0.3 581,215 - -0.0 581,215 - -0.9 581,262 + -0.5 581,278 + +1.1 581,278 + +1.8 581,278 + +0.2 581,278 + +1.9 581,279 - +0.0 581,282 + -2.6 581,282 + -2.3 581,282 + -0.1 581,282 + -2.1 581,283 - -1.1 581,283 - -3.0 581,283 - +2.1 581,283 - -1.3 581,427 + LU632_RS02850 0.70 +1.1 581,476 + -0.2 581,476 + -0.8 581,476 + +0.3 581,530 - +0.5 581,530 - -1.3 581,583 + +0.1 581,583 + -1.3 581,584 - +0.1 581,584 - -0.8 581,584 - -2.3 581,584 - +0.4 581,822 + LU632_RS02855 0.53 -2.9 581,822 + LU632_RS02855 0.53 +1.1 581,822 + LU632_RS02855 0.53 -0.5 581,822 + LU632_RS02855 0.53 +0.7 581,906 + LU632_RS02855 0.76 +2.1 581,907 - LU632_RS02855 0.77 -0.4 581,912 + LU632_RS02855 0.78 +1.1 581,913 - LU632_RS02855 0.78 +1.8 581,913 - LU632_RS02855 0.78 +0.9 582,018 + -0.8 582,018 + +1.3 582,018 + -0.7 582,018 + +1.0 582,019 - -0.8 582,024 + -0.4 582,024 + +0.9 582,025 - +0.6
Or see this region's nucleotide sequence