Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxA and rsmA overlap by 1 nucleotides rsmA and apaG are separated by 1 nucleotides apaG and apaH are separated by 44 nucleotides
LU632_RS02725: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 548,981 to 549,964
pdxA
LU632_RS02730: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 549,964 to 550,794
rsmA
LU632_RS02735: apaG - Co2+/Mg2+ efflux protein ApaG, at 550,796 to 551,173
apaG
LU632_RS02740: apaH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 551,218 to 552,048
apaH
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 549.829 kb on + strand, within pdxA at 549.934 kb on + strand at 549.962 kb on + strand at 550.033 kb on + strand at 550.034 kb on - strand at 550.036 kb on - strand at 550.144 kb on - strand, within rsmA at 550.261 kb on + strand, within rsmA at 550.309 kb on + strand, within rsmA at 550.310 kb on - strand, within rsmA at 550.311 kb on + strand, within rsmA at 550.349 kb on - strand, within rsmA at 550.351 kb on - strand, within rsmA at 550.459 kb on + strand, within rsmA at 550.538 kb on + strand, within rsmA at 550.629 kb on + strand, within rsmA at 550.835 kb on - strand, within apaG at 550.874 kb on + strand, within apaG at 550.888 kb on + strand, within apaG at 550.888 kb on + strand, within apaG at 550.929 kb on + strand, within apaG at 551.039 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.092 kb on + strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.093 kb on - strand, within apaG at 551.127 kb on + strand, within apaG at 551.172 kb on - strand at 552.050 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.065 kb on + strand at 552.066 kb on - strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.088 kb on + strand at 552.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 549,829 + pdxA LU632_RS02725 0.86 -0.3 549,934 + -1.8 549,962 + -0.5 550,033 + +0.1 550,034 - +1.1 550,036 - +2.3 550,144 - rsmA LU632_RS02730 0.22 +0.1 550,261 + rsmA LU632_RS02730 0.36 +1.1 550,309 + rsmA LU632_RS02730 0.42 +2.8 550,310 - rsmA LU632_RS02730 0.42 +1.1 550,311 + rsmA LU632_RS02730 0.42 -0.2 550,349 - rsmA LU632_RS02730 0.46 -0.3 550,351 - rsmA LU632_RS02730 0.47 +1.1 550,459 + rsmA LU632_RS02730 0.60 +0.1 550,538 + rsmA LU632_RS02730 0.69 +1.1 550,629 + rsmA LU632_RS02730 0.80 -1.8 550,835 - apaG LU632_RS02735 0.10 +1.1 550,874 + apaG LU632_RS02735 0.21 +0.2 550,888 + apaG LU632_RS02735 0.24 -2.3 550,888 + apaG LU632_RS02735 0.24 +2.9 550,929 + apaG LU632_RS02735 0.35 +1.4 551,039 + apaG LU632_RS02735 0.64 +1.6 551,092 + apaG LU632_RS02735 0.78 +1.1 551,092 + apaG LU632_RS02735 0.78 +1.8 551,092 + apaG LU632_RS02735 0.78 +0.3 551,092 + apaG LU632_RS02735 0.78 +1.0 551,092 + apaG LU632_RS02735 0.78 +0.5 551,093 - apaG LU632_RS02735 0.79 +2.3 551,093 - apaG LU632_RS02735 0.79 +1.2 551,093 - apaG LU632_RS02735 0.79 -2.9 551,093 - apaG LU632_RS02735 0.79 -2.5 551,127 + apaG LU632_RS02735 0.88 +0.7 551,172 - +3.6 552,050 + -1.3 552,065 + -2.1 552,065 + -2.9 552,065 + +1.1 552,065 + -2.3 552,066 - -2.1 552,088 + +0.4 552,088 + +0.5 552,088 + -0.4 552,088 + +1.1 552,089 - -3.1
Or see this region's nucleotide sequence