Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02510

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02505 and LU632_RS02510 overlap by 4 nucleotidesLU632_RS02510 and deoC are separated by 274 nucleotides LU632_RS02505: LU632_RS02505 - DUF6363 domain-containing protein, at 497,380 to 498,342 _RS02505 LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115 _RS02510 LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169 deoC Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.389 kb on + strandat 497.390 kb on - strandat 497.391 kb on + strandat 497.392 kb on - strandat 497.587 kb on + strand, within LU632_RS02505at 497.589 kb on + strand, within LU632_RS02505at 497.589 kb on + strand, within LU632_RS02505at 497.607 kb on + strand, within LU632_RS02505at 497.609 kb on + strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.610 kb on - strand, within LU632_RS02505at 497.740 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.806 kb on + strand, within LU632_RS02505at 497.807 kb on - strand, within LU632_RS02505at 497.807 kb on - strand, within LU632_RS02505at 498.009 kb on + strand, within LU632_RS02505at 498.010 kb on - strand, within LU632_RS02505at 498.034 kb on + strand, within LU632_RS02505at 498.035 kb on - strand, within LU632_RS02505at 498.035 kb on - strand, within LU632_RS02505at 498.055 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.118 kb on - strand, within LU632_RS02505at 498.158 kb on - strand, within LU632_RS02505at 498.281 kb on + strandat 498.282 kb on - strandat 498.282 kb on - strandat 498.320 kb on - strandat 498.516 kb on + strand, within LU632_RS02510at 498.555 kb on + strand, within LU632_RS02510at 498.588 kb on + strand, within LU632_RS02510at 498.588 kb on + strand, within LU632_RS02510at 498.589 kb on - strand, within LU632_RS02510at 498.589 kb on - strand, within LU632_RS02510at 498.589 kb on - strand, within LU632_RS02510at 498.589 kb on - strand, within LU632_RS02510at 498.589 kb on - strand, within LU632_RS02510at 498.590 kb on + strand, within LU632_RS02510at 498.591 kb on - strand, within LU632_RS02510at 498.721 kb on + strand, within LU632_RS02510at 498.722 kb on - strand, within LU632_RS02510at 498.722 kb on - strand, within LU632_RS02510at 498.889 kb on - strand, within LU632_RS02510at 499.092 kb on - strandat 499.109 kb on + strandat 499.110 kb on - strandat 499.209 kb on + strandat 499.209 kb on + strandat 499.210 kb on - strandat 499.214 kb on + strandat 499.214 kb on + strandat 499.215 kb on - strandat 499.215 kb on - strandat 499.215 kb on - strandat 499.306 kb on + strandat 499.307 kb on - strandat 499.307 kb on - strandat 499.358 kb on + strandat 499.359 kb on - strandat 499.530 kb on + strand, within deoCat 499.530 kb on + strand, within deoCat 499.531 kb on - strand, within deoCat 499.531 kb on - strand, within deoCat 499.534 kb on + strand, within deoCat 499.884 kb on + strand, within deoCat 500.053 kb on - strand, within deoC

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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497,389 + -0.5
497,389 + +0.6
497,389 + +0.5
497,389 + -0.9
497,389 + +0.0
497,389 + +0.2
497,390 - +3.9
497,391 + +0.5
497,392 - +0.1
497,587 + LU632_RS02505 0.21 -0.5
497,589 + LU632_RS02505 0.22 -3.2
497,589 + LU632_RS02505 0.22 -0.9
497,607 + LU632_RS02505 0.24 +0.1
497,609 + LU632_RS02505 0.24 -2.7
497,610 - LU632_RS02505 0.24 +0.2
497,610 - LU632_RS02505 0.24 -1.2
497,610 - LU632_RS02505 0.24 -0.1
497,740 + LU632_RS02505 0.37 -0.0
497,806 + LU632_RS02505 0.44 +0.1
497,806 + LU632_RS02505 0.44 -1.2
497,806 + LU632_RS02505 0.44 +0.1
497,806 + LU632_RS02505 0.44 +2.1
497,806 + LU632_RS02505 0.44 -1.6
497,807 - LU632_RS02505 0.44 -0.9
497,807 - LU632_RS02505 0.44 -0.6
498,009 + LU632_RS02505 0.65 -0.9
498,010 - LU632_RS02505 0.65 +1.1
498,034 + LU632_RS02505 0.68 +0.5
498,035 - LU632_RS02505 0.68 -2.7
498,035 - LU632_RS02505 0.68 -1.5
498,055 - LU632_RS02505 0.70 -0.5
498,118 - LU632_RS02505 0.77 +0.3
498,118 - LU632_RS02505 0.77 +0.8
498,118 - LU632_RS02505 0.77 -1.9
498,158 - LU632_RS02505 0.81 +1.1
498,281 + -0.9
498,282 - +0.0
498,282 - -0.3
498,320 - +0.1
498,516 + LU632_RS02510 0.23 +0.4
498,555 + LU632_RS02510 0.28 +0.1
498,588 + LU632_RS02510 0.32 -2.7
498,588 + LU632_RS02510 0.32 -0.5
498,589 - LU632_RS02510 0.32 -2.5
498,589 - LU632_RS02510 0.32 -0.2
498,589 - LU632_RS02510 0.32 -0.3
498,589 - LU632_RS02510 0.32 -0.3
498,589 - LU632_RS02510 0.32 -1.2
498,590 + LU632_RS02510 0.32 +0.0
498,591 - LU632_RS02510 0.32 +0.4
498,721 + LU632_RS02510 0.49 -0.8
498,722 - LU632_RS02510 0.49 +0.2
498,722 - LU632_RS02510 0.49 +1.8
498,889 - LU632_RS02510 0.71 +0.3
499,092 - -0.1
499,109 + +1.0
499,110 - +3.4
499,209 + +0.1
499,209 + +0.9
499,210 - +1.1
499,214 + -0.5
499,214 + +0.3
499,215 - +0.7
499,215 - +1.0
499,215 - -0.1
499,306 + +0.2
499,307 - -0.6
499,307 - -0.7
499,358 + +0.2
499,359 - +2.3
499,530 + deoC LU632_RS02515 0.18 +1.0
499,530 + deoC LU632_RS02515 0.18 -0.2
499,531 - deoC LU632_RS02515 0.18 -1.2
499,531 - deoC LU632_RS02515 0.18 -0.7
499,534 + deoC LU632_RS02515 0.18 +0.1
499,884 + deoC LU632_RS02515 0.63 +1.4
500,053 - deoC LU632_RS02515 0.85 -0.7

Or see this region's nucleotide sequence