Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and LU632_RS02490 are separated by 140 nucleotides LU632_RS02490 and LU632_RS02495 are separated by 96 nucleotides
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
LU632_RS02490: LU632_RS02490 - DUF1328 domain-containing protein, at 494,860 to 495,021
_RS02490
LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326
_RS02495
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 493.939 kb on + strand at 493.939 kb on + strand at 493.941 kb on + strand at 493.942 kb on - strand at 493.949 kb on - strand at 493.979 kb on + strand at 493.991 kb on + strand at 494.005 kb on + strand at 494.117 kb on - strand at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY at 494.212 kb on + strand, within osmY at 494.329 kb on + strand, within osmY at 494.330 kb on - strand, within osmY at 494.342 kb on - strand, within osmY at 494.497 kb on - strand, within osmY at 494.542 kb on + strand, within osmY at 494.542 kb on + strand, within osmY at 494.543 kb on - strand, within osmY at 494.543 kb on - strand, within osmY at 494.575 kb on + strand, within osmY at 494.702 kb on - strand at 494.772 kb on - strand at 494.772 kb on - strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.787 kb on - strand at 494.860 kb on - strand at 494.934 kb on + strand, within LU632_RS02490 at 494.976 kb on + strand, within LU632_RS02490 at 494.977 kb on - strand, within LU632_RS02490 at 495.350 kb on + strand, within LU632_RS02495 at 495.350 kb on + strand, within LU632_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 493,939 + +1.1 493,939 + -2.2 493,941 + -1.9 493,942 - -0.2 493,949 - +0.2 493,979 + -3.0 493,991 + -0.5 494,005 + +0.9 494,117 - -0.5 494,134 + +0.4 494,135 - -0.5 494,142 + -0.8 494,143 - -2.1 494,171 + osmY LU632_RS02485 0.11 +0.5 494,188 + osmY LU632_RS02485 0.13 -0.5 494,212 + osmY LU632_RS02485 0.17 -1.7 494,329 + osmY LU632_RS02485 0.36 -0.5 494,330 - osmY LU632_RS02485 0.37 +2.7 494,342 - osmY LU632_RS02485 0.39 +1.8 494,497 - osmY LU632_RS02485 0.64 +0.8 494,542 + osmY LU632_RS02485 0.71 -1.2 494,542 + osmY LU632_RS02485 0.71 -1.5 494,543 - osmY LU632_RS02485 0.71 +2.9 494,543 - osmY LU632_RS02485 0.71 -1.0 494,575 + osmY LU632_RS02485 0.76 -1.5 494,702 - +5.6 494,772 - -1.7 494,772 - +1.3 494,781 + +0.6 494,782 - +1.1 494,782 - -1.2 494,787 - -1.6 494,860 - -1.8 494,934 + LU632_RS02490 0.46 +1.0 494,976 + LU632_RS02490 0.72 -2.5 494,977 - LU632_RS02490 0.72 +1.7 495,350 + LU632_RS02495 0.19 -0.9 495,350 + LU632_RS02495 0.19 -2.7
Or see this region's nucleotide sequence