Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mpl and LU632_RS02140 are separated by 61 nucleotides LU632_RS02140 and pmbA are separated by 166 nucleotides pmbA and cybC are separated by 89 nucleotides cybC and LU632_RS02155 are separated by 182 nucleotides
LU632_RS02135: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 423,703 to 425,082
mpl
LU632_RS02140: LU632_RS02140 - ribosome-associated protein, at 425,144 to 425,683
_RS02140
LU632_RS02145: pmbA - metalloprotease PmbA, at 425,850 to 427,190
pmbA
LU632_RS02150: cybC - cytochrome b562, at 427,280 to 427,663
cybC
LU632_RS02155: LU632_RS02155 - hypothetical protein, at 427,846 to 428,040
_RS02155
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.109 kb on - strand at 425.283 kb on - strand, within LU632_RS02140 at 425.365 kb on + strand, within LU632_RS02140 at 425.445 kb on - strand, within LU632_RS02140 at 425.550 kb on - strand, within LU632_RS02140 at 425.730 kb on + strand at 425.757 kb on + strand at 425.775 kb on + strand at 425.775 kb on - strand at 425.833 kb on - strand at 425.906 kb on - strand at 426.141 kb on + strand, within pmbA at 426.308 kb on + strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.382 kb on - strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.451 kb on - strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.461 kb on + strand, within pmbA at 426.527 kb on - strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.630 kb on - strand, within pmbA at 426.806 kb on - strand, within pmbA at 426.884 kb on + strand, within pmbA at 427.000 kb on - strand, within pmbA at 427.140 kb on - strand at 427.207 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.214 kb on - strand at 427.264 kb on + strand at 427.387 kb on + strand, within cybC at 427.546 kb on - strand, within cybC at 427.782 kb on - strand at 427.782 kb on - strand at 427.782 kb on - strand at 428.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 425,109 - -2.2 425,283 - LU632_RS02140 0.26 -2.5 425,365 + LU632_RS02140 0.41 -1.7 425,445 - LU632_RS02140 0.56 +1.1 425,550 - LU632_RS02140 0.75 -2.3 425,730 + -0.1 425,757 + -3.0 425,775 + -0.1 425,775 - -1.3 425,833 - -3.0 425,906 - -1.2 426,141 + pmbA LU632_RS02145 0.22 +0.5 426,308 + pmbA LU632_RS02145 0.34 -2.3 426,344 - pmbA LU632_RS02145 0.37 +0.2 426,344 - pmbA LU632_RS02145 0.37 -0.9 426,382 - pmbA LU632_RS02145 0.40 +2.3 426,450 + pmbA LU632_RS02145 0.45 -0.0 426,450 + pmbA LU632_RS02145 0.45 -1.7 426,450 + pmbA LU632_RS02145 0.45 +0.0 426,451 - pmbA LU632_RS02145 0.45 -0.9 426,456 + pmbA LU632_RS02145 0.45 -0.9 426,456 + pmbA LU632_RS02145 0.45 -3.7 426,456 + pmbA LU632_RS02145 0.45 -1.5 426,456 + pmbA LU632_RS02145 0.45 +3.7 426,457 - pmbA LU632_RS02145 0.45 -0.3 426,457 - pmbA LU632_RS02145 0.45 -3.1 426,457 - pmbA LU632_RS02145 0.45 -0.8 426,458 + pmbA LU632_RS02145 0.45 -0.3 426,458 + pmbA LU632_RS02145 0.45 -1.2 426,461 + pmbA LU632_RS02145 0.46 +0.1 426,527 - pmbA LU632_RS02145 0.50 -0.7 426,548 + pmbA LU632_RS02145 0.52 -3.0 426,548 + pmbA LU632_RS02145 0.52 +0.1 426,548 + pmbA LU632_RS02145 0.52 -3.6 426,630 - pmbA LU632_RS02145 0.58 +0.7 426,806 - pmbA LU632_RS02145 0.71 -0.9 426,884 + pmbA LU632_RS02145 0.77 -1.4 427,000 - pmbA LU632_RS02145 0.86 -0.5 427,140 - -0.3 427,207 + +1.3 427,210 + +1.4 427,210 + -2.2 427,210 + -2.2 427,214 - +1.3 427,264 + +0.8 427,387 + cybC LU632_RS02150 0.28 +1.7 427,546 - cybC LU632_RS02150 0.69 -2.8 427,782 - +0.8 427,782 - +3.1 427,782 - +1.6 428,078 + -0.2
Or see this region's nucleotide sequence