Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02140

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmpl and LU632_RS02140 are separated by 61 nucleotidesLU632_RS02140 and pmbA are separated by 166 nucleotides LU632_RS02135: mpl - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 423,703 to 425,082 mpl LU632_RS02140: LU632_RS02140 - ribosome-associated protein, at 425,144 to 425,683 _RS02140 LU632_RS02145: pmbA - metalloprotease PmbA, at 425,850 to 427,190 pmbA Position (kb) 425 426Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 424.186 kb on + strand, within mplat 424.187 kb on - strand, within mplat 424.300 kb on - strand, within mplat 424.322 kb on + strand, within mplat 424.322 kb on + strand, within mplat 424.322 kb on + strand, within mplat 424.323 kb on - strand, within mplat 424.323 kb on - strand, within mplat 424.618 kb on - strand, within mplat 424.674 kb on - strand, within mplat 424.682 kb on - strand, within mplat 424.725 kb on + strand, within mplat 424.791 kb on + strand, within mplat 425.109 kb on - strandat 425.283 kb on - strand, within LU632_RS02140at 425.365 kb on + strand, within LU632_RS02140at 425.445 kb on - strand, within LU632_RS02140at 425.550 kb on - strand, within LU632_RS02140at 425.730 kb on + strandat 425.757 kb on + strandat 425.775 kb on + strandat 425.775 kb on - strandat 425.833 kb on - strandat 425.906 kb on - strandat 426.141 kb on + strand, within pmbAat 426.308 kb on + strand, within pmbAat 426.344 kb on - strand, within pmbAat 426.344 kb on - strand, within pmbAat 426.382 kb on - strand, within pmbAat 426.450 kb on + strand, within pmbAat 426.450 kb on + strand, within pmbAat 426.450 kb on + strand, within pmbAat 426.451 kb on - strand, within pmbAat 426.456 kb on + strand, within pmbAat 426.456 kb on + strand, within pmbAat 426.456 kb on + strand, within pmbAat 426.456 kb on + strand, within pmbAat 426.457 kb on - strand, within pmbAat 426.457 kb on - strand, within pmbAat 426.457 kb on - strand, within pmbAat 426.458 kb on + strand, within pmbAat 426.458 kb on + strand, within pmbAat 426.461 kb on + strand, within pmbAat 426.527 kb on - strand, within pmbAat 426.548 kb on + strand, within pmbAat 426.548 kb on + strand, within pmbAat 426.548 kb on + strand, within pmbAat 426.630 kb on - strand, within pmbA

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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424,186 + mpl LU632_RS02135 0.35 -2.5
424,187 - mpl LU632_RS02135 0.35 -1.3
424,300 - mpl LU632_RS02135 0.43 +1.2
424,322 + mpl LU632_RS02135 0.45 -1.2
424,322 + mpl LU632_RS02135 0.45 +0.5
424,322 + mpl LU632_RS02135 0.45 +1.2
424,323 - mpl LU632_RS02135 0.45 -0.4
424,323 - mpl LU632_RS02135 0.45 -1.8
424,618 - mpl LU632_RS02135 0.66 -1.8
424,674 - mpl LU632_RS02135 0.70 -0.4
424,682 - mpl LU632_RS02135 0.71 +1.7
424,725 + mpl LU632_RS02135 0.74 -2.3
424,791 + mpl LU632_RS02135 0.79 +0.2
425,109 - -2.2
425,283 - LU632_RS02140 0.26 -2.5
425,365 + LU632_RS02140 0.41 -1.7
425,445 - LU632_RS02140 0.56 +1.2
425,550 - LU632_RS02140 0.75 -2.3
425,730 + -0.1
425,757 + -3.0
425,775 + -0.1
425,775 - -1.3
425,833 - -2.9
425,906 - -1.2
426,141 + pmbA LU632_RS02145 0.22 +0.5
426,308 + pmbA LU632_RS02145 0.34 -2.3
426,344 - pmbA LU632_RS02145 0.37 +0.3
426,344 - pmbA LU632_RS02145 0.37 -0.8
426,382 - pmbA LU632_RS02145 0.40 +2.4
426,450 + pmbA LU632_RS02145 0.45 +0.0
426,450 + pmbA LU632_RS02145 0.45 -1.7
426,450 + pmbA LU632_RS02145 0.45 +0.0
426,451 - pmbA LU632_RS02145 0.45 -0.9
426,456 + pmbA LU632_RS02145 0.45 -0.8
426,456 + pmbA LU632_RS02145 0.45 -3.7
426,456 + pmbA LU632_RS02145 0.45 -1.4
426,456 + pmbA LU632_RS02145 0.45 +3.8
426,457 - pmbA LU632_RS02145 0.45 -0.2
426,457 - pmbA LU632_RS02145 0.45 -3.1
426,457 - pmbA LU632_RS02145 0.45 -0.8
426,458 + pmbA LU632_RS02145 0.45 -0.3
426,458 + pmbA LU632_RS02145 0.45 -1.2
426,461 + pmbA LU632_RS02145 0.46 +0.2
426,527 - pmbA LU632_RS02145 0.50 -0.7
426,548 + pmbA LU632_RS02145 0.52 -2.9
426,548 + pmbA LU632_RS02145 0.52 +0.1
426,548 + pmbA LU632_RS02145 0.52 -3.5
426,630 - pmbA LU632_RS02145 0.58 +0.7

Or see this region's nucleotide sequence