Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02100 and LU632_RS02105 are separated by 519 nucleotides LU632_RS02105 and LU632_RS02110 overlap by 4 nucleotides
LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205
_RS02100
LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449
_RS02105
LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213
_RS02110
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 412.725 kb on + strand, within LU632_RS02100 at 412.899 kb on + strand, within LU632_RS02100 at 412.900 kb on - strand, within LU632_RS02100 at 413.061 kb on + strand, within LU632_RS02100 at 413.082 kb on + strand at 413.083 kb on - strand at 413.083 kb on - strand at 413.166 kb on + strand at 413.197 kb on - strand at 413.197 kb on - strand at 413.201 kb on - strand at 413.205 kb on + strand at 413.216 kb on + strand at 413.216 kb on + strand at 413.246 kb on - strand at 413.398 kb on + strand at 413.399 kb on - strand at 413.406 kb on + strand at 413.428 kb on + strand at 413.434 kb on + strand at 413.435 kb on - strand at 413.473 kb on + strand at 413.477 kb on + strand at 413.477 kb on + strand at 413.486 kb on + strand at 413.487 kb on - strand at 413.494 kb on + strand at 413.497 kb on - strand at 413.545 kb on - strand at 413.569 kb on + strand at 413.570 kb on - strand at 413.570 kb on - strand at 413.642 kb on + strand at 413.697 kb on + strand at 413.720 kb on - strand at 413.732 kb on - strand at 413.904 kb on - strand, within LU632_RS02105 at 413.904 kb on - strand, within LU632_RS02105 at 413.932 kb on + strand, within LU632_RS02105 at 414.006 kb on - strand, within LU632_RS02105 at 414.021 kb on + strand, within LU632_RS02105 at 414.080 kb on - strand, within LU632_RS02105 at 414.123 kb on - strand, within LU632_RS02105 at 414.140 kb on - strand, within LU632_RS02105 at 414.150 kb on + strand, within LU632_RS02105 at 414.168 kb on + strand, within LU632_RS02105 at 414.202 kb on + strand, within LU632_RS02105 at 414.203 kb on - strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.364 kb on + strand, within LU632_RS02105 at 414.365 kb on - strand, within LU632_RS02105 at 414.368 kb on - strand, within LU632_RS02105 at 414.423 kb on + strand, within LU632_RS02105 at 414.514 kb on - strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.530 kb on + strand, within LU632_RS02105 at 414.536 kb on - strand, within LU632_RS02105 at 414.591 kb on + strand, within LU632_RS02105 at 414.595 kb on + strand, within LU632_RS02105 at 414.658 kb on + strand, within LU632_RS02105 at 414.661 kb on - strand, within LU632_RS02105 at 414.694 kb on + strand, within LU632_RS02105 at 414.694 kb on + strand, within LU632_RS02105 at 414.695 kb on - strand, within LU632_RS02105 at 414.695 kb on - strand, within LU632_RS02105 at 414.697 kb on + strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.698 kb on - strand, within LU632_RS02105 at 414.738 kb on + strand, within LU632_RS02105 at 415.159 kb on - strand, within LU632_RS02105 at 415.231 kb on + strand, within LU632_RS02105 at 415.232 kb on - strand, within LU632_RS02105 at 415.237 kb on + strand, within LU632_RS02105 at 415.238 kb on - strand, within LU632_RS02105 at 415.238 kb on - strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.239 kb on + strand, within LU632_RS02105 at 415.413 kb on + strand at 415.415 kb on + strand at 415.415 kb on + strand at 415.415 kb on + strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.416 kb on - strand at 415.424 kb on - strand at 415.424 kb on - strand at 415.446 kb on - strand at 415.496 kb on - strand at 415.498 kb on + strand at 415.498 kb on + strand at 415.498 kb on + strand at 415.502 kb on + strand at 415.520 kb on - strand at 415.661 kb on + strand at 415.859 kb on + strand, within LU632_RS02110 at 415.859 kb on + strand, within LU632_RS02110 at 415.859 kb on + strand, within LU632_RS02110 at 415.860 kb on - strand, within LU632_RS02110 at 415.871 kb on + strand, within LU632_RS02110 at 415.871 kb on + strand, within LU632_RS02110 at 415.872 kb on - strand, within LU632_RS02110 at 415.872 kb on - strand, within LU632_RS02110 at 415.875 kb on - strand, within LU632_RS02110 at 416.027 kb on - strand, within LU632_RS02110 at 416.143 kb on + strand, within LU632_RS02110 at 416.171 kb on + strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.172 kb on - strand, within LU632_RS02110 at 416.199 kb on - strand, within LU632_RS02110 at 416.209 kb on + strand, within LU632_RS02110 at 416.209 kb on + strand, within LU632_RS02110 at 416.210 kb on - strand, within LU632_RS02110 at 416.237 kb on - strand, within LU632_RS02110 at 416.312 kb on + strand, within LU632_RS02110 at 416.340 kb on - strand, within LU632_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 412,725 + LU632_RS02100 0.64 -3.2 412,899 + LU632_RS02100 0.77 -3.5 412,900 - LU632_RS02100 0.77 -3.6 413,061 + LU632_RS02100 0.89 -2.7 413,082 + -2.0 413,083 - -3.5 413,083 - -5.3 413,166 + -1.4 413,197 - -0.8 413,197 - -4.0 413,201 - -0.4 413,205 + -1.8 413,216 + -4.1 413,216 + -4.3 413,246 - +1.6 413,398 + -4.4 413,399 - +0.8 413,406 + -5.6 413,428 + +1.2 413,434 + -2.3 413,435 - -0.4 413,473 + +1.0 413,477 + -0.1 413,477 + -2.7 413,486 + +1.3 413,487 - +0.2 413,494 + -2.3 413,497 - +1.6 413,545 - -1.0 413,569 + -1.7 413,570 - +0.7 413,570 - +1.7 413,642 + +3.2 413,697 + +0.1 413,720 - -1.0 413,732 - -2.4 413,904 - LU632_RS02105 0.10 -1.7 413,904 - LU632_RS02105 0.10 -4.0 413,932 + LU632_RS02105 0.12 +0.4 414,006 - LU632_RS02105 0.16 -4.4 414,021 + LU632_RS02105 0.17 +1.2 414,080 - LU632_RS02105 0.21 -2.8 414,123 - LU632_RS02105 0.23 -1.5 414,140 - LU632_RS02105 0.24 -2.0 414,150 + LU632_RS02105 0.25 -1.8 414,168 + LU632_RS02105 0.26 -1.2 414,202 + LU632_RS02105 0.28 -0.5 414,203 - LU632_RS02105 0.28 -0.8 414,364 + LU632_RS02105 0.37 -1.7 414,364 + LU632_RS02105 0.37 -2.2 414,364 + LU632_RS02105 0.37 -3.8 414,365 - LU632_RS02105 0.37 -3.4 414,368 - LU632_RS02105 0.37 +0.5 414,423 + LU632_RS02105 0.40 -0.5 414,514 - LU632_RS02105 0.46 -0.8 414,530 + LU632_RS02105 0.47 -1.5 414,530 + LU632_RS02105 0.47 -0.1 414,530 + LU632_RS02105 0.47 -1.4 414,536 - LU632_RS02105 0.47 +2.3 414,591 + LU632_RS02105 0.50 +1.6 414,595 + LU632_RS02105 0.50 -1.4 414,658 + LU632_RS02105 0.54 -2.0 414,661 - LU632_RS02105 0.54 -0.7 414,694 + LU632_RS02105 0.56 -2.8 414,694 + LU632_RS02105 0.56 -0.4 414,695 - LU632_RS02105 0.56 -2.5 414,695 - LU632_RS02105 0.56 -1.2 414,697 + LU632_RS02105 0.56 -1.7 414,698 - LU632_RS02105 0.56 +4.3 414,698 - LU632_RS02105 0.56 -0.8 414,698 - LU632_RS02105 0.56 +0.2 414,738 + LU632_RS02105 0.59 +0.2 415,159 - LU632_RS02105 0.83 +1.7 415,231 + LU632_RS02105 0.87 -2.3 415,232 - LU632_RS02105 0.87 -1.4 415,237 + LU632_RS02105 0.88 -1.7 415,238 - LU632_RS02105 0.88 -0.7 415,238 - LU632_RS02105 0.88 -1.7 415,239 + LU632_RS02105 0.88 -0.5 415,239 + LU632_RS02105 0.88 -1.1 415,239 + LU632_RS02105 0.88 -2.5 415,413 + -3.5 415,415 + -0.7 415,415 + +0.2 415,415 + -0.7 415,416 - -2.0 415,416 - -3.5 415,416 - +1.4 415,416 - +1.2 415,416 - -1.4 415,416 - -0.2 415,416 - -3.4 415,424 - -1.7 415,424 - -1.7 415,446 - -1.0 415,496 - -3.5 415,498 + -1.4 415,498 + -2.4 415,498 + -1.6 415,502 + -1.7 415,520 - -1.7 415,661 + +2.7 415,859 + LU632_RS02110 0.11 +0.1 415,859 + LU632_RS02110 0.11 -1.2 415,859 + LU632_RS02110 0.11 -2.9 415,860 - LU632_RS02110 0.11 -1.2 415,871 + LU632_RS02110 0.11 -2.0 415,871 + LU632_RS02110 0.11 +1.3 415,872 - LU632_RS02110 0.11 -0.8 415,872 - LU632_RS02110 0.11 -0.6 415,875 - LU632_RS02110 0.11 -4.3 416,027 - LU632_RS02110 0.15 -2.4 416,143 + LU632_RS02110 0.18 -3.3 416,171 + LU632_RS02110 0.19 -1.8 416,172 - LU632_RS02110 0.19 -1.2 416,172 - LU632_RS02110 0.19 -0.2 416,172 - LU632_RS02110 0.19 +1.2 416,199 - LU632_RS02110 0.20 -3.8 416,209 + LU632_RS02110 0.20 -0.4 416,209 + LU632_RS02110 0.20 +0.2 416,210 - LU632_RS02110 0.20 -1.4 416,237 - LU632_RS02110 0.21 -1.7 416,312 + LU632_RS02110 0.23 -0.8 416,340 - LU632_RS02110 0.24 -2.2
Or see this region's nucleotide sequence