Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01840

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01830 and LU632_RS01835 are separated by 171 nucleotidesLU632_RS01835 and LU632_RS01840 are separated by 178 nucleotidesLU632_RS01840 and LU632_RS01845 are separated by 194 nucleotides LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677 _RS01830 LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495 _RS01835 LU632_RS01840: LU632_RS01840 - protein-disulfide reductase DsbD, at 353,674 to 355,362 _RS01840 LU632_RS01845: LU632_RS01845 - anaerobic C4-dicarboxylate transporter, at 355,557 to 356,858 _RS01845 Position (kb) 353 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 352.702 kb on + strandat 352.747 kb on + strandat 352.748 kb on - strandat 352.775 kb on + strandat 352.775 kb on + strandat 352.775 kb on + strandat 352.776 kb on - strandat 352.778 kb on - strandat 352.778 kb on - strandat 352.788 kb on + strandat 353.585 kb on - strandat 353.593 kb on + strandat 353.593 kb on + strandat 353.601 kb on + strandat 353.601 kb on + strandat 353.602 kb on - strandat 353.602 kb on - strandat 353.602 kb on - strandat 353.602 kb on - strandat 353.602 kb on - strandat 353.602 kb on - strandat 353.605 kb on + strandat 353.676 kb on - strandat 353.794 kb on + strandat 353.795 kb on - strandat 353.795 kb on - strandat 353.832 kb on + strandat 353.904 kb on + strand, within LU632_RS01840at 353.905 kb on - strand, within LU632_RS01840at 353.905 kb on - strand, within LU632_RS01840at 353.907 kb on - strand, within LU632_RS01840at 354.048 kb on + strand, within LU632_RS01840at 354.349 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.374 kb on + strand, within LU632_RS01840at 354.375 kb on - strand, within LU632_RS01840at 354.375 kb on - strand, within LU632_RS01840at 354.380 kb on + strand, within LU632_RS01840at 354.381 kb on - strand, within LU632_RS01840at 354.381 kb on - strand, within LU632_RS01840at 354.381 kb on - strand, within LU632_RS01840at 354.425 kb on + strand, within LU632_RS01840at 354.425 kb on + strand, within LU632_RS01840at 354.426 kb on - strand, within LU632_RS01840at 354.426 kb on - strand, within LU632_RS01840at 354.426 kb on - strand, within LU632_RS01840at 354.705 kb on + strand, within LU632_RS01840at 354.705 kb on + strand, within LU632_RS01840at 354.706 kb on - strand, within LU632_RS01840at 354.706 kb on - strand, within LU632_RS01840at 354.708 kb on - strand, within LU632_RS01840at 354.708 kb on - strand, within LU632_RS01840at 354.708 kb on - strand, within LU632_RS01840at 354.731 kb on + strand, within LU632_RS01840at 354.731 kb on + strand, within LU632_RS01840at 354.731 kb on + strand, within LU632_RS01840at 354.731 kb on + strand, within LU632_RS01840at 354.732 kb on - strand, within LU632_RS01840at 354.732 kb on - strand, within LU632_RS01840at 354.809 kb on + strand, within LU632_RS01840at 354.809 kb on + strand, within LU632_RS01840at 354.810 kb on - strand, within LU632_RS01840at 354.965 kb on - strand, within LU632_RS01840at 354.965 kb on - strand, within LU632_RS01840at 354.985 kb on - strand, within LU632_RS01840at 355.205 kb on + strandat 355.211 kb on + strandat 355.212 kb on - strandat 355.212 kb on - strandat 355.212 kb on - strandat 355.212 kb on - strandat 355.242 kb on + strandat 355.243 kb on - strandat 355.421 kb on - strandat 355.423 kb on + strandat 355.423 kb on + strandat 355.424 kb on - strandat 355.488 kb on - strandat 355.489 kb on + strandat 355.489 kb on + strandat 355.572 kb on - strandat 355.614 kb on + strandat 355.628 kb on + strandat 355.628 kb on + strandat 355.629 kb on - strandat 355.905 kb on + strand, within LU632_RS01845at 355.905 kb on + strand, within LU632_RS01845at 355.905 kb on + strand, within LU632_RS01845at 355.906 kb on - strand, within LU632_RS01845at 355.906 kb on - strand, within LU632_RS01845at 355.926 kb on - strand, within LU632_RS01845at 355.967 kb on + strand, within LU632_RS01845at 355.967 kb on + strand, within LU632_RS01845at 356.042 kb on + strand, within LU632_RS01845at 356.043 kb on - strand, within LU632_RS01845at 356.070 kb on + strand, within LU632_RS01845at 356.070 kb on + strand, within LU632_RS01845at 356.071 kb on - strand, within LU632_RS01845at 356.091 kb on + strand, within LU632_RS01845

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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352,702 + -0.2
352,747 + +0.7
352,748 - +0.1
352,775 + +0.5
352,775 + +4.2
352,775 + +1.0
352,776 - -0.6
352,778 - +1.1
352,778 - +0.6
352,788 + -2.9
353,585 - -2.7
353,593 + +2.7
353,593 + -3.7
353,601 + +0.5
353,601 + -0.0
353,602 - +0.9
353,602 - +0.4
353,602 - +2.7
353,602 - -0.3
353,602 - -0.8
353,602 - -2.0
353,605 + +1.6
353,676 - -1.4
353,794 + +1.9
353,795 - -0.3
353,795 - -0.5
353,832 + +0.1
353,904 + LU632_RS01840 0.14 +0.2
353,905 - LU632_RS01840 0.14 -1.7
353,905 - LU632_RS01840 0.14 -1.3
353,907 - LU632_RS01840 0.14 -0.8
354,048 + LU632_RS01840 0.22 +0.3
354,349 + LU632_RS01840 0.40 -0.4
354,374 + LU632_RS01840 0.41 +1.4
354,374 + LU632_RS01840 0.41 -0.2
354,374 + LU632_RS01840 0.41 -0.8
354,374 + LU632_RS01840 0.41 -1.9
354,374 + LU632_RS01840 0.41 +1.2
354,374 + LU632_RS01840 0.41 -1.2
354,374 + LU632_RS01840 0.41 +3.2
354,375 - LU632_RS01840 0.42 +1.2
354,375 - LU632_RS01840 0.42 +1.2
354,380 + LU632_RS01840 0.42 +0.2
354,381 - LU632_RS01840 0.42 +1.2
354,381 - LU632_RS01840 0.42 +1.2
354,381 - LU632_RS01840 0.42 +0.6
354,425 + LU632_RS01840 0.44 +0.6
354,425 + LU632_RS01840 0.44 +1.2
354,426 - LU632_RS01840 0.45 +0.6
354,426 - LU632_RS01840 0.45 +0.8
354,426 - LU632_RS01840 0.45 +1.7
354,705 + LU632_RS01840 0.61 -0.5
354,705 + LU632_RS01840 0.61 +1.1
354,706 - LU632_RS01840 0.61 +1.5
354,706 - LU632_RS01840 0.61 -1.8
354,708 - LU632_RS01840 0.61 +1.6
354,708 - LU632_RS01840 0.61 -1.4
354,708 - LU632_RS01840 0.61 +0.2
354,731 + LU632_RS01840 0.63 -1.2
354,731 + LU632_RS01840 0.63 +0.2
354,731 + LU632_RS01840 0.63 -1.3
354,731 + LU632_RS01840 0.63 +1.2
354,732 - LU632_RS01840 0.63 -2.7
354,732 - LU632_RS01840 0.63 +0.2
354,809 + LU632_RS01840 0.67 -1.3
354,809 + LU632_RS01840 0.67 +1.4
354,810 - LU632_RS01840 0.67 -0.7
354,965 - LU632_RS01840 0.76 +0.5
354,965 - LU632_RS01840 0.76 -0.8
354,985 - LU632_RS01840 0.78 -0.3
355,205 + +0.2
355,211 + +1.2
355,212 - -0.3
355,212 - -0.4
355,212 - +0.9
355,212 - -0.2
355,242 + +1.6
355,243 - -3.1
355,421 - +0.6
355,423 + +1.2
355,423 + -0.8
355,424 - +1.2
355,488 - +2.3
355,489 + -0.8
355,489 + +1.2
355,572 - +1.4
355,614 + -1.4
355,628 + -0.8
355,628 + -1.2
355,629 - +1.9
355,905 + LU632_RS01845 0.27 -2.0
355,905 + LU632_RS01845 0.27 -1.4
355,905 + LU632_RS01845 0.27 +1.9
355,906 - LU632_RS01845 0.27 -2.8
355,906 - LU632_RS01845 0.27 -0.4
355,926 - LU632_RS01845 0.28 -0.9
355,967 + LU632_RS01845 0.31 -1.0
355,967 + LU632_RS01845 0.31 +1.6
356,042 + LU632_RS01845 0.37 -0.8
356,043 - LU632_RS01845 0.37 -2.7
356,070 + LU632_RS01845 0.39 +0.6
356,070 + LU632_RS01845 0.39 +2.2
356,071 - LU632_RS01845 0.39 -0.8
356,091 + LU632_RS01845 0.41 +1.5

Or see this region's nucleotide sequence