Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01780 and LU632_RS01785 are separated by 174 nucleotides LU632_RS01785 and LU632_RS01790 are separated by 159 nucleotides LU632_RS01790 and LU632_RS01795 are separated by 167 nucleotides LU632_RS01795 and LU632_RS01800 are separated by 25 nucleotides
LU632_RS01780: LU632_RS01780 - conjugal transfer protein TraE, at 345,029 to 345,997
_RS01780
LU632_RS01785: LU632_RS01785 - hypothetical protein, at 346,172 to 346,729
_RS01785
LU632_RS01790: LU632_RS01790 - hypothetical protein, at 346,889 to 347,059
_RS01790
LU632_RS01795: LU632_RS01795 - TraI domain-containing protein, at 347,227 to 347,688
_RS01795
LU632_RS01800: LU632_RS01800 - DNA-binding domain-containing protein, at 347,714 to 348,442
_RS01800
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 345.998 kb on - strand at 345.998 kb on - strand at 345.998 kb on - strand at 346.068 kb on + strand at 346.089 kb on + strand at 346.090 kb on - strand at 346.091 kb on + strand at 346.121 kb on + strand at 346.729 kb on + strand at 346.729 kb on + strand at 346.818 kb on - strand at 346.818 kb on - strand at 346.832 kb on + strand at 346.833 kb on - strand at 346.887 kb on + strand at 346.888 kb on - strand at 347.019 kb on + strand, within LU632_RS01790 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.446 kb on + strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.447 kb on - strand, within LU632_RS01795 at 347.448 kb on + strand, within LU632_RS01795 at 347.723 kb on - strand at 347.725 kb on + strand at 347.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 345,998 - +1.7 345,998 - -2.2 345,998 - +0.4 346,068 + -0.1 346,089 + +0.6 346,090 - -0.4 346,091 + +0.0 346,121 + -1.7 346,729 + +2.2 346,729 + +1.7 346,818 - +0.6 346,818 - +0.4 346,832 + +0.9 346,833 - +0.3 346,887 + +3.4 346,888 - +0.8 347,019 + LU632_RS01790 0.76 +2.1 347,446 + LU632_RS01795 0.47 -0.2 347,446 + LU632_RS01795 0.47 +0.3 347,446 + LU632_RS01795 0.47 -4.2 347,446 + LU632_RS01795 0.47 +1.2 347,446 + LU632_RS01795 0.47 +3.0 347,447 - LU632_RS01795 0.48 +1.2 347,447 - LU632_RS01795 0.48 -0.4 347,447 - LU632_RS01795 0.48 +3.2 347,447 - LU632_RS01795 0.48 -1.5 347,447 - LU632_RS01795 0.48 -2.5 347,447 - LU632_RS01795 0.48 -0.7 347,447 - LU632_RS01795 0.48 +0.8 347,448 + LU632_RS01795 0.48 -1.2 347,723 - +2.3 347,725 + +2.9 347,733 + -1.6
Or see this region's nucleotide sequence