Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01750 and LU632_RS01755 overlap by 8 nucleotides LU632_RS01755 and LU632_RS01760 overlap by 8 nucleotides LU632_RS01760 and LU632_RS01765 are separated by 37 nucleotides LU632_RS01765 and LU632_RS01770 are separated by 12 nucleotides LU632_RS01770 and LU632_RS01775 are separated by 54 nucleotides LU632_RS01775 and LU632_RS01780 are separated by 109 nucleotides
LU632_RS01750: LU632_RS01750 - class I SAM-dependent methyltransferase, at 342,784 to 343,233
_RS01750
LU632_RS01755: LU632_RS01755 - hypothetical protein, at 343,226 to 343,501
_RS01755
LU632_RS01760: LU632_RS01760 - hypothetical protein, at 343,494 to 343,772
_RS01760
LU632_RS01765: LU632_RS01765 - LysR family transcriptional regulator, at 343,810 to 344,073
_RS01765
LU632_RS01770: LU632_RS01770 - hypothetical protein, at 344,086 to 344,628
_RS01770
LU632_RS01775: LU632_RS01775 - conjugal transfer protein TraF, at 344,683 to 344,919
_RS01775
LU632_RS01780: LU632_RS01780 - conjugal transfer protein TraE, at 345,029 to 345,997
_RS01780
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 343.132 kb on - strand, within LU632_RS01750 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.259 kb on - strand, within LU632_RS01755 at 343.273 kb on - strand, within LU632_RS01755 at 343.423 kb on + strand, within LU632_RS01755 at 343.423 kb on + strand, within LU632_RS01755 at 343.471 kb on - strand, within LU632_RS01755 at 343.471 kb on - strand, within LU632_RS01755 at 343.491 kb on + strand at 343.650 kb on - strand, within LU632_RS01760 at 343.651 kb on + strand, within LU632_RS01760 at 343.651 kb on + strand, within LU632_RS01760 at 343.651 kb on + strand, within LU632_RS01760 at 343.652 kb on - strand, within LU632_RS01760 at 343.652 kb on - strand, within LU632_RS01760 at 343.687 kb on + strand, within LU632_RS01760 at 343.687 kb on + strand, within LU632_RS01760 at 343.687 kb on + strand, within LU632_RS01760 at 343.688 kb on - strand, within LU632_RS01760 at 343.691 kb on + strand, within LU632_RS01760 at 343.692 kb on - strand, within LU632_RS01760 at 343.692 kb on - strand, within LU632_RS01760 at 343.878 kb on + strand, within LU632_RS01765 at 343.878 kb on + strand, within LU632_RS01765 at 343.879 kb on - strand, within LU632_RS01765 at 343.879 kb on - strand, within LU632_RS01765 at 343.879 kb on - strand, within LU632_RS01765 at 344.053 kb on + strand at 344.103 kb on + strand at 344.104 kb on - strand at 344.279 kb on + strand, within LU632_RS01770 at 344.280 kb on - strand, within LU632_RS01770 at 344.358 kb on + strand, within LU632_RS01770 at 344.358 kb on + strand, within LU632_RS01770 at 344.358 kb on + strand, within LU632_RS01770 at 344.358 kb on + strand, within LU632_RS01770 at 344.358 kb on + strand, within LU632_RS01770 at 344.359 kb on - strand, within LU632_RS01770 at 344.359 kb on - strand, within LU632_RS01770 at 344.359 kb on - strand, within LU632_RS01770 at 344.387 kb on - strand, within LU632_RS01770 at 344.680 kb on - strand at 344.680 kb on - strand at 344.680 kb on - strand at 344.686 kb on - strand at 344.705 kb on + strand at 344.705 kb on + strand at 344.937 kb on + strand at 344.997 kb on - strand at 345.071 kb on - strand at 345.071 kb on - strand at 345.193 kb on + strand, within LU632_RS01780 at 345.193 kb on + strand, within LU632_RS01780 at 345.204 kb on + strand, within LU632_RS01780 at 345.622 kb on + strand, within LU632_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 343,132 - LU632_RS01750 0.77 -0.0 343,258 + LU632_RS01755 0.12 +0.3 343,258 + LU632_RS01755 0.12 +1.1 343,258 + LU632_RS01755 0.12 -0.2 343,259 - LU632_RS01755 0.12 -1.5 343,273 - LU632_RS01755 0.17 +0.2 343,423 + LU632_RS01755 0.71 +0.9 343,423 + LU632_RS01755 0.71 +1.7 343,471 - LU632_RS01755 0.89 +0.1 343,471 - LU632_RS01755 0.89 +1.3 343,491 + -1.5 343,650 - LU632_RS01760 0.56 +0.3 343,651 + LU632_RS01760 0.56 +0.2 343,651 + LU632_RS01760 0.56 -0.6 343,651 + LU632_RS01760 0.56 -1.2 343,652 - LU632_RS01760 0.57 +0.9 343,652 - LU632_RS01760 0.57 -0.4 343,687 + LU632_RS01760 0.69 +0.5 343,687 + LU632_RS01760 0.69 -0.2 343,687 + LU632_RS01760 0.69 +2.5 343,688 - LU632_RS01760 0.70 -0.1 343,691 + LU632_RS01760 0.71 +0.6 343,692 - LU632_RS01760 0.71 +1.3 343,692 - LU632_RS01760 0.71 +1.2 343,878 + LU632_RS01765 0.26 -1.2 343,878 + LU632_RS01765 0.26 +0.2 343,879 - LU632_RS01765 0.26 -0.5 343,879 - LU632_RS01765 0.26 -0.6 343,879 - LU632_RS01765 0.26 -1.2 344,053 + +1.2 344,103 + +1.6 344,104 - +2.6 344,279 + LU632_RS01770 0.36 -0.2 344,280 - LU632_RS01770 0.36 +3.0 344,358 + LU632_RS01770 0.50 +1.7 344,358 + LU632_RS01770 0.50 +1.5 344,358 + LU632_RS01770 0.50 +0.1 344,358 + LU632_RS01770 0.50 +1.2 344,358 + LU632_RS01770 0.50 +1.3 344,359 - LU632_RS01770 0.50 -1.8 344,359 - LU632_RS01770 0.50 -0.4 344,359 - LU632_RS01770 0.50 +1.2 344,387 - LU632_RS01770 0.55 +3.2 344,680 - +1.7 344,680 - +2.2 344,680 - +3.7 344,686 - +3.1 344,705 + -1.2 344,705 + -0.8 344,937 + +0.7 344,997 - +1.4 345,071 - +2.2 345,071 - -0.3 345,193 + LU632_RS01780 0.17 -1.4 345,193 + LU632_RS01780 0.17 -0.2 345,204 + LU632_RS01780 0.18 +1.8 345,622 + LU632_RS01780 0.61 +0.4
Or see this region's nucleotide sequence