Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01565 and LU632_RS01570 overlap by 4 nucleotides LU632_RS01570 and LU632_RS01575 are separated by 485 nucleotides LU632_RS01575 and LU632_RS01580 are separated by 70 nucleotides
LU632_RS01565: LU632_RS01565 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 314,151 to 314,372
_RS01565
LU632_RS01570: LU632_RS01570 - type II toxin-antitoxin system death-on-curing family toxin, at 314,369 to 314,752
_RS01570
LU632_RS01575: LU632_RS01575 - hypothetical protein, at 315,238 to 315,741
_RS01575
LU632_RS01580: LU632_RS01580 - phage portal protein, at 315,812 to 316,870
_RS01580
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 314.351 kb on + strand at 314.352 kb on - strand at 314.420 kb on - strand, within LU632_RS01570 at 314.420 kb on - strand, within LU632_RS01570 at 314.478 kb on - strand, within LU632_RS01570 at 314.501 kb on + strand, within LU632_RS01570 at 314.540 kb on + strand, within LU632_RS01570 at 314.540 kb on + strand, within LU632_RS01570 at 314.541 kb on - strand, within LU632_RS01570 at 314.541 kb on - strand, within LU632_RS01570 at 314.541 kb on - strand, within LU632_RS01570 at 314.541 kb on - strand, within LU632_RS01570 at 314.711 kb on - strand, within LU632_RS01570 at 314.751 kb on - strand at 314.817 kb on - strand at 315.212 kb on - strand at 315.258 kb on - strand at 315.309 kb on - strand, within LU632_RS01575 at 315.341 kb on - strand, within LU632_RS01575 at 315.343 kb on + strand, within LU632_RS01575 at 315.343 kb on + strand, within LU632_RS01575 at 315.406 kb on + strand, within LU632_RS01575 at 315.406 kb on + strand, within LU632_RS01575 at 315.407 kb on + strand, within LU632_RS01575 at 315.407 kb on - strand, within LU632_RS01575 at 315.585 kb on + strand, within LU632_RS01575 at 315.597 kb on + strand, within LU632_RS01575 at 315.722 kb on - strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.771 kb on + strand at 315.772 kb on - strand at 315.772 kb on - strand at 315.828 kb on - strand at 316.215 kb on + strand, within LU632_RS01580 at 316.216 kb on - strand, within LU632_RS01580 at 316.222 kb on + strand, within LU632_RS01580 at 316.223 kb on - strand, within LU632_RS01580 at 316.223 kb on - strand, within LU632_RS01580 at 316.223 kb on - strand, within LU632_RS01580 at 316.223 kb on - strand, within LU632_RS01580 at 316.223 kb on - strand, within LU632_RS01580 at 316.249 kb on - strand, within LU632_RS01580 at 316.249 kb on - strand, within LU632_RS01580 at 316.251 kb on + strand, within LU632_RS01580 at 316.309 kb on + strand, within LU632_RS01580 at 316.310 kb on - strand, within LU632_RS01580 at 316.310 kb on - strand, within LU632_RS01580 at 316.310 kb on - strand, within LU632_RS01580 at 316.311 kb on + strand, within LU632_RS01580 at 316.311 kb on + strand, within LU632_RS01580 at 316.312 kb on - strand, within LU632_RS01580 at 316.322 kb on - strand, within LU632_RS01580 at 316.322 kb on - strand, within LU632_RS01580 at 316.327 kb on - strand, within LU632_RS01580 at 316.387 kb on - strand, within LU632_RS01580 at 316.387 kb on - strand, within LU632_RS01580 at 316.416 kb on + strand, within LU632_RS01580 at 316.416 kb on + strand, within LU632_RS01580 at 316.420 kb on + strand, within LU632_RS01580 at 316.421 kb on - strand, within LU632_RS01580 at 316.421 kb on - strand, within LU632_RS01580 at 316.424 kb on - strand, within LU632_RS01580 at 316.447 kb on + strand, within LU632_RS01580 at 316.448 kb on - strand, within LU632_RS01580 at 316.510 kb on - strand, within LU632_RS01580 at 316.510 kb on - strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.584 kb on + strand, within LU632_RS01580 at 316.585 kb on - strand, within LU632_RS01580 at 316.585 kb on - strand, within LU632_RS01580 at 316.585 kb on - strand, within LU632_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 314,351 + -1.7 314,352 - +0.6 314,420 - LU632_RS01570 0.13 +0.2 314,420 - LU632_RS01570 0.13 -0.4 314,478 - LU632_RS01570 0.28 +1.5 314,501 + LU632_RS01570 0.34 +2.7 314,540 + LU632_RS01570 0.45 -0.6 314,540 + LU632_RS01570 0.45 +2.4 314,541 - LU632_RS01570 0.45 -0.8 314,541 - LU632_RS01570 0.45 -0.5 314,541 - LU632_RS01570 0.45 -2.2 314,541 - LU632_RS01570 0.45 -2.7 314,711 - LU632_RS01570 0.89 -1.9 314,751 - +1.5 314,817 - +0.4 315,212 - +0.3 315,258 - +0.3 315,309 - LU632_RS01575 0.14 -0.8 315,341 - LU632_RS01575 0.20 +1.3 315,343 + LU632_RS01575 0.21 +0.3 315,343 + LU632_RS01575 0.21 +2.8 315,406 + LU632_RS01575 0.33 +1.0 315,406 + LU632_RS01575 0.33 +1.2 315,407 + LU632_RS01575 0.34 +4.2 315,407 - LU632_RS01575 0.34 +2.7 315,585 + LU632_RS01575 0.69 +0.9 315,597 + LU632_RS01575 0.71 +0.1 315,722 - +2.1 315,733 + -2.0 315,734 - -1.6 315,771 + -3.0 315,772 - -1.9 315,772 - -0.7 315,828 - +0.2 316,215 + LU632_RS01580 0.38 -2.8 316,216 - LU632_RS01580 0.38 +0.1 316,222 + LU632_RS01580 0.39 -0.8 316,223 - LU632_RS01580 0.39 +0.5 316,223 - LU632_RS01580 0.39 -0.2 316,223 - LU632_RS01580 0.39 -0.4 316,223 - LU632_RS01580 0.39 +0.6 316,223 - LU632_RS01580 0.39 -0.3 316,249 - LU632_RS01580 0.41 -0.2 316,249 - LU632_RS01580 0.41 -1.8 316,251 + LU632_RS01580 0.41 +0.2 316,309 + LU632_RS01580 0.47 +0.1 316,310 - LU632_RS01580 0.47 +0.5 316,310 - LU632_RS01580 0.47 -0.0 316,310 - LU632_RS01580 0.47 +1.2 316,311 + LU632_RS01580 0.47 +0.6 316,311 + LU632_RS01580 0.47 +0.2 316,312 - LU632_RS01580 0.47 -0.4 316,322 - LU632_RS01580 0.48 +1.3 316,322 - LU632_RS01580 0.48 +0.6 316,327 - LU632_RS01580 0.49 +0.8 316,387 - LU632_RS01580 0.54 -2.3 316,387 - LU632_RS01580 0.54 -0.8 316,416 + LU632_RS01580 0.57 +1.0 316,416 + LU632_RS01580 0.57 +1.2 316,420 + LU632_RS01580 0.57 -1.0 316,421 - LU632_RS01580 0.58 -0.0 316,421 - LU632_RS01580 0.58 +2.6 316,424 - LU632_RS01580 0.58 -0.4 316,447 + LU632_RS01580 0.60 -1.2 316,448 - LU632_RS01580 0.60 +2.0 316,510 - LU632_RS01580 0.66 +0.7 316,510 - LU632_RS01580 0.66 +0.6 316,584 + LU632_RS01580 0.73 -0.9 316,584 + LU632_RS01580 0.73 +1.6 316,584 + LU632_RS01580 0.73 +0.8 316,584 + LU632_RS01580 0.73 +1.7 316,584 + LU632_RS01580 0.73 -0.3 316,584 + LU632_RS01580 0.73 +0.4 316,585 - LU632_RS01580 0.73 -0.4 316,585 - LU632_RS01580 0.73 -1.7 316,585 - LU632_RS01580 0.73 +2.1
Or see this region's nucleotide sequence