Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01350 and LU632_RS01355 overlap by 4 nucleotides LU632_RS01355 and LU632_RS01360 are separated by 299 nucleotides LU632_RS01360 and asd are separated by 267 nucleotides
LU632_RS01350: LU632_RS01350 - lactonase family protein, at 283,363 to 284,469
_RS01350
LU632_RS01355: LU632_RS01355 - hypothetical protein, at 284,466 to 284,777
_RS01355
LU632_RS01360: LU632_RS01360 - YhgN family NAAT transporter, at 285,077 to 285,673
_RS01360
LU632_RS01365: asd - aspartate-semialdehyde dehydrogenase, at 285,941 to 287,050
asd
Position (kb) 285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 284.108 kb on + strand, within LU632_RS01350 at 284.261 kb on + strand, within LU632_RS01350 at 284.262 kb on - strand, within LU632_RS01350 at 284.262 kb on - strand, within LU632_RS01350 at 284.263 kb on + strand, within LU632_RS01350 at 284.263 kb on + strand, within LU632_RS01350 at 284.263 kb on + strand, within LU632_RS01350 at 284.264 kb on - strand, within LU632_RS01350 at 284.264 kb on - strand, within LU632_RS01350 at 284.427 kb on + strand at 284.431 kb on + strand at 284.431 kb on + strand at 284.431 kb on + strand at 284.431 kb on + strand at 284.431 kb on + strand at 284.432 kb on - strand at 284.522 kb on + strand, within LU632_RS01355 at 284.523 kb on - strand, within LU632_RS01355 at 284.578 kb on + strand, within LU632_RS01355 at 284.579 kb on - strand, within LU632_RS01355 at 284.579 kb on - strand, within LU632_RS01355 at 284.627 kb on + strand, within LU632_RS01355 at 284.627 kb on + strand, within LU632_RS01355 at 284.647 kb on + strand, within LU632_RS01355 at 284.647 kb on + strand, within LU632_RS01355 at 284.648 kb on - strand, within LU632_RS01355 at 284.648 kb on - strand, within LU632_RS01355 at 284.648 kb on - strand, within LU632_RS01355 at 284.652 kb on - strand, within LU632_RS01355 at 284.652 kb on - strand, within LU632_RS01355 at 284.723 kb on + strand, within LU632_RS01355 at 284.759 kb on + strand at 284.856 kb on - strand at 284.856 kb on - strand at 284.857 kb on + strand at 284.857 kb on + strand at 284.900 kb on + strand at 284.901 kb on - strand at 284.901 kb on - strand at 284.901 kb on - strand at 284.935 kb on + strand at 284.958 kb on - strand at 284.984 kb on + strand at 284.984 kb on + strand at 284.985 kb on - strand at 284.985 kb on - strand at 284.985 kb on - strand at 285.090 kb on + strand at 285.091 kb on - strand at 285.215 kb on + strand, within LU632_RS01360 at 285.216 kb on - strand, within LU632_RS01360 at 285.270 kb on - strand, within LU632_RS01360 at 285.270 kb on - strand, within LU632_RS01360 at 285.440 kb on - strand, within LU632_RS01360 at 285.601 kb on + strand, within LU632_RS01360 at 285.601 kb on + strand, within LU632_RS01360 at 285.644 kb on + strand at 285.645 kb on - strand at 285.647 kb on + strand at 285.696 kb on - strand at 285.703 kb on + strand at 285.819 kb on + strand at 285.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 284,108 + LU632_RS01350 0.67 -1.8 284,261 + LU632_RS01350 0.81 +2.2 284,262 - LU632_RS01350 0.81 -2.8 284,262 - LU632_RS01350 0.81 -0.4 284,263 + LU632_RS01350 0.81 +0.4 284,263 + LU632_RS01350 0.81 -1.6 284,263 + LU632_RS01350 0.81 +1.2 284,264 - LU632_RS01350 0.81 -1.4 284,264 - LU632_RS01350 0.81 +1.2 284,427 + +1.3 284,431 + +1.2 284,431 + -0.5 284,431 + -0.4 284,431 + -0.0 284,431 + +2.1 284,432 - -0.2 284,522 + LU632_RS01355 0.18 -0.1 284,523 - LU632_RS01355 0.18 +0.3 284,578 + LU632_RS01355 0.36 -0.9 284,579 - LU632_RS01355 0.36 +2.8 284,579 - LU632_RS01355 0.36 +0.3 284,627 + LU632_RS01355 0.52 -0.8 284,627 + LU632_RS01355 0.52 +1.9 284,647 + LU632_RS01355 0.58 +2.0 284,647 + LU632_RS01355 0.58 -0.7 284,648 - LU632_RS01355 0.58 -0.8 284,648 - LU632_RS01355 0.58 +0.2 284,648 - LU632_RS01355 0.58 -2.0 284,652 - LU632_RS01355 0.60 -0.3 284,652 - LU632_RS01355 0.60 -0.4 284,723 + LU632_RS01355 0.82 -0.2 284,759 + +0.1 284,856 - +0.2 284,856 - -1.1 284,857 + +0.5 284,857 + -0.4 284,900 + +0.4 284,901 - +1.2 284,901 - -2.1 284,901 - +0.2 284,935 + -0.3 284,958 - +1.2 284,984 + +2.1 284,984 + +0.2 284,985 - -2.3 284,985 - +0.6 284,985 - -3.5 285,090 + +1.5 285,091 - +1.0 285,215 + LU632_RS01360 0.23 -0.9 285,216 - LU632_RS01360 0.23 -0.4 285,270 - LU632_RS01360 0.32 +1.7 285,270 - LU632_RS01360 0.32 +1.5 285,440 - LU632_RS01360 0.61 +0.8 285,601 + LU632_RS01360 0.88 +1.0 285,601 + LU632_RS01360 0.88 +1.1 285,644 + +0.5 285,645 - +1.6 285,647 + +0.5 285,696 - -0.5 285,703 + -1.1 285,819 + +0.8 285,845 + +1.4
Or see this region's nucleotide sequence