Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01235 and LU632_RS01240 are separated by 65 nucleotides LU632_RS01240 and LU632_RS01245 are separated by 50 nucleotides LU632_RS01245 and dcuR overlap by 23 nucleotides dcuR and LU632_RS01255 overlap by 4 nucleotides
LU632_RS01235: LU632_RS01235 - FAD-binding protein, at 260,064 to 260,627
_RS01235
LU632_RS01240: LU632_RS01240 - FAD-binding protein, at 260,693 to 261,061
_RS01240
LU632_RS01245: LU632_RS01245 - FAD:protein FMN transferase, at 261,112 to 262,080
_RS01245
LU632_RS01250: dcuR - two-component system response regulator DcuR, at 262,058 to 262,781
dcuR
LU632_RS01255: LU632_RS01255 - ATP-binding protein, at 262,778 to 263,086
_RS01255
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 260.142 kb on + strand, within LU632_RS01235 at 260.143 kb on - strand, within LU632_RS01235 at 260.184 kb on - strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.241 kb on + strand, within LU632_RS01235 at 260.278 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.282 kb on + strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.283 kb on - strand, within LU632_RS01235 at 260.344 kb on + strand, within LU632_RS01235 at 260.375 kb on + strand, within LU632_RS01235 at 260.376 kb on - strand, within LU632_RS01235 at 260.378 kb on + strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.379 kb on - strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.416 kb on + strand, within LU632_RS01235 at 260.675 kb on + strand at 260.675 kb on + strand at 260.675 kb on + strand at 260.676 kb on - strand at 260.677 kb on + strand at 260.678 kb on - strand at 260.678 kb on - strand at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.763 kb on - strand, within LU632_RS01240 at 260.858 kb on - strand, within LU632_RS01240 at 260.949 kb on + strand, within LU632_RS01240 at 260.990 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.005 kb on - strand, within LU632_RS01240 at 261.008 kb on - strand, within LU632_RS01240 at 261.129 kb on + strand at 261.129 kb on + strand at 261.129 kb on + strand at 261.130 kb on - strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.133 kb on + strand at 261.134 kb on - strand at 261.139 kb on + strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.140 kb on - strand at 261.272 kb on + strand, within LU632_RS01245 at 261.340 kb on - strand, within LU632_RS01245 at 261.576 kb on + strand, within LU632_RS01245 at 261.602 kb on + strand, within LU632_RS01245 at 261.603 kb on - strand, within LU632_RS01245 at 261.732 kb on + strand, within LU632_RS01245 at 261.773 kb on - strand, within LU632_RS01245 at 261.813 kb on + strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.871 kb on - strand, within LU632_RS01245 at 261.978 kb on - strand, within LU632_RS01245 at 262.071 kb on + strand at 262.071 kb on + strand at 262.286 kb on - strand, within dcuR at 262.336 kb on + strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.384 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.387 kb on - strand, within dcuR at 262.489 kb on + strand, within dcuR at 262.490 kb on - strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.542 kb on + strand, within dcuR at 262.609 kb on + strand, within dcuR at 262.610 kb on - strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.626 kb on + strand, within dcuR at 262.627 kb on - strand, within dcuR at 262.692 kb on - strand, within dcuR at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.764 kb on + strand at 262.765 kb on - strand at 262.767 kb on + strand at 262.776 kb on + strand at 262.777 kb on - strand at 262.777 kb on - strand at 262.814 kb on + strand, within LU632_RS01255 at 262.815 kb on - strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.957 kb on + strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 262.958 kb on - strand, within LU632_RS01255 at 263.080 kb on + strand at 263.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 260,142 + LU632_RS01235 0.14 +0.8 260,143 - LU632_RS01235 0.14 +0.4 260,184 - LU632_RS01235 0.21 -1.3 260,241 + LU632_RS01235 0.31 +0.2 260,241 + LU632_RS01235 0.31 -1.4 260,278 + LU632_RS01235 0.38 +1.5 260,282 + LU632_RS01235 0.39 +0.2 260,282 + LU632_RS01235 0.39 -3.4 260,282 + LU632_RS01235 0.39 -1.2 260,282 + LU632_RS01235 0.39 +3.0 260,282 + LU632_RS01235 0.39 +0.2 260,283 - LU632_RS01235 0.39 -0.4 260,283 - LU632_RS01235 0.39 -0.4 260,344 + LU632_RS01235 0.50 -2.3 260,375 + LU632_RS01235 0.55 -1.2 260,376 - LU632_RS01235 0.55 -2.5 260,378 + LU632_RS01235 0.56 +1.5 260,379 - LU632_RS01235 0.56 +0.6 260,379 - LU632_RS01235 0.56 +1.2 260,416 + LU632_RS01235 0.62 +0.2 260,416 + LU632_RS01235 0.62 -0.8 260,675 + +0.6 260,675 + -0.4 260,675 + +4.3 260,676 - -0.5 260,677 + +1.2 260,678 - -0.5 260,678 - +1.2 260,763 - LU632_RS01240 0.19 +3.6 260,763 - LU632_RS01240 0.19 -2.1 260,763 - LU632_RS01240 0.19 -0.4 260,858 - LU632_RS01240 0.45 -0.4 260,949 + LU632_RS01240 0.69 -3.2 260,990 - LU632_RS01240 0.80 +1.2 261,005 - LU632_RS01240 0.85 -0.3 261,005 - LU632_RS01240 0.85 -0.2 261,008 - LU632_RS01240 0.85 +0.7 261,129 + -0.7 261,129 + +1.9 261,129 + +0.2 261,130 - +0.6 261,133 + +0.7 261,133 + +0.4 261,133 + -1.9 261,134 - +0.5 261,139 + -0.3 261,140 - +0.5 261,140 - -0.0 261,140 - +1.3 261,272 + LU632_RS01245 0.17 -0.8 261,340 - LU632_RS01245 0.24 -0.8 261,576 + LU632_RS01245 0.48 -1.0 261,602 + LU632_RS01245 0.51 -0.4 261,603 - LU632_RS01245 0.51 +0.5 261,732 + LU632_RS01245 0.64 +0.2 261,773 - LU632_RS01245 0.68 +2.3 261,813 + LU632_RS01245 0.72 -0.1 261,871 - LU632_RS01245 0.78 -3.4 261,871 - LU632_RS01245 0.78 -0.4 261,978 - LU632_RS01245 0.89 -0.1 262,071 + +1.8 262,071 + -1.4 262,286 - dcuR LU632_RS01250 0.31 -0.3 262,336 + dcuR LU632_RS01250 0.38 +0.3 262,384 - dcuR LU632_RS01250 0.45 +0.0 262,384 - dcuR LU632_RS01250 0.45 +1.3 262,387 - dcuR LU632_RS01250 0.45 -0.4 262,387 - dcuR LU632_RS01250 0.45 -0.1 262,387 - dcuR LU632_RS01250 0.45 -0.3 262,387 - dcuR LU632_RS01250 0.45 -0.6 262,489 + dcuR LU632_RS01250 0.60 +1.4 262,490 - dcuR LU632_RS01250 0.60 +1.1 262,542 + dcuR LU632_RS01250 0.67 -0.7 262,542 + dcuR LU632_RS01250 0.67 -2.7 262,542 + dcuR LU632_RS01250 0.67 +1.2 262,609 + dcuR LU632_RS01250 0.76 +0.4 262,610 - dcuR LU632_RS01250 0.76 -0.8 262,626 + dcuR LU632_RS01250 0.78 -1.4 262,626 + dcuR LU632_RS01250 0.78 +1.1 262,627 - dcuR LU632_RS01250 0.79 +0.0 262,692 - dcuR LU632_RS01250 0.88 +1.0 262,764 + +1.6 262,764 + +0.3 262,764 + +0.6 262,764 + -3.1 262,765 - +3.0 262,767 + +2.0 262,776 + -2.3 262,777 - -2.1 262,777 - -1.1 262,814 + LU632_RS01255 0.12 -0.2 262,815 - LU632_RS01255 0.12 -1.8 262,957 + LU632_RS01255 0.58 -1.4 262,957 + LU632_RS01255 0.58 -1.1 262,958 - LU632_RS01255 0.58 -1.4 262,958 - LU632_RS01255 0.58 -2.3 263,080 + +0.9 263,080 + -0.3
Or see this region's nucleotide sequence