Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpA and LU632_RS01070 are separated by 559 nucleotides LU632_RS01070 and mltD are separated by 359 nucleotides
LU632_RS01065: tnpA - IS200/IS605 family transposase, at 229,452 to 229,888
tnpA
LU632_RS01070: LU632_RS01070 - endonuclease/exonuclease/phosphatase family protein, at 230,448 to 231,254
_RS01070
LU632_RS01075: mltD - murein transglycosylase D, at 231,614 to 233,002
mltD
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 230.067 kb on + strand at 230.067 kb on + strand at 230.135 kb on + strand at 230.136 kb on - strand at 230.149 kb on + strand at 230.150 kb on - strand at 230.153 kb on + strand at 230.154 kb on - strand at 230.154 kb on - strand at 230.155 kb on + strand at 230.155 kb on + strand at 230.156 kb on - strand at 230.160 kb on - strand at 230.160 kb on - strand at 230.199 kb on + strand at 230.199 kb on + strand at 230.273 kb on - strand at 230.275 kb on + strand at 230.301 kb on + strand at 230.301 kb on + strand at 230.302 kb on - strand at 230.302 kb on - strand at 230.317 kb on + strand at 230.338 kb on + strand at 230.339 kb on - strand at 230.361 kb on - strand at 230.384 kb on + strand at 230.432 kb on - strand at 230.475 kb on + strand at 230.476 kb on - strand at 230.479 kb on + strand at 230.480 kb on - strand at 230.501 kb on + strand at 230.519 kb on + strand at 230.519 kb on + strand at 230.519 kb on + strand at 230.665 kb on + strand, within LU632_RS01070 at 230.665 kb on + strand, within LU632_RS01070 at 230.666 kb on - strand, within LU632_RS01070 at 230.666 kb on - strand, within LU632_RS01070 at 230.666 kb on - strand, within LU632_RS01070 at 230.752 kb on + strand, within LU632_RS01070 at 230.805 kb on + strand, within LU632_RS01070 at 230.910 kb on - strand, within LU632_RS01070 at 230.927 kb on + strand, within LU632_RS01070 at 230.945 kb on - strand, within LU632_RS01070 at 230.945 kb on - strand, within LU632_RS01070 at 230.946 kb on + strand, within LU632_RS01070 at 230.946 kb on + strand, within LU632_RS01070 at 230.981 kb on + strand, within LU632_RS01070 at 230.981 kb on + strand, within LU632_RS01070 at 231.053 kb on - strand, within LU632_RS01070 at 231.068 kb on + strand, within LU632_RS01070 at 231.072 kb on - strand, within LU632_RS01070 at 231.089 kb on - strand, within LU632_RS01070 at 231.225 kb on - strand at 231.249 kb on - strand at 231.255 kb on + strand at 231.255 kb on + strand at 231.255 kb on + strand at 231.255 kb on + strand at 231.256 kb on - strand at 231.256 kb on - strand at 231.265 kb on - strand at 231.265 kb on - strand at 231.351 kb on + strand at 231.370 kb on + strand at 231.402 kb on - strand at 231.402 kb on - strand at 231.404 kb on + strand at 231.481 kb on + strand at 231.482 kb on - strand at 231.484 kb on - strand at 231.494 kb on + strand at 231.514 kb on + strand at 231.514 kb on + strand at 231.672 kb on - strand at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.770 kb on - strand, within mltD at 231.771 kb on + strand, within mltD at 231.771 kb on + strand, within mltD at 231.771 kb on + strand, within mltD at 231.771 kb on + strand, within mltD at 231.772 kb on - strand, within mltD at 231.776 kb on - strand, within mltD at 231.776 kb on - strand, within mltD at 231.776 kb on - strand, within mltD at 231.777 kb on + strand, within mltD at 231.777 kb on + strand, within mltD at 231.777 kb on + strand, within mltD at 231.777 kb on + strand, within mltD at 231.777 kb on + strand, within mltD at 231.778 kb on - strand, within mltD at 231.778 kb on - strand, within mltD at 231.778 kb on - strand, within mltD at 231.778 kb on - strand, within mltD at 231.778 kb on - strand, within mltD at 231.954 kb on + strand, within mltD at 231.955 kb on - strand, within mltD at 231.955 kb on - strand, within mltD at 231.977 kb on - strand, within mltD at 231.977 kb on - strand, within mltD at 232.049 kb on - strand, within mltD at 232.064 kb on - strand, within mltD at 232.064 kb on - strand, within mltD at 232.069 kb on - strand, within mltD at 232.069 kb on - strand, within mltD at 232.252 kb on + strand, within mltD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 230,067 + -1.4 230,067 + -0.4 230,135 + +0.2 230,136 - +1.0 230,149 + +2.7 230,150 - -1.0 230,153 + -0.1 230,154 - -0.1 230,154 - -0.4 230,155 + -1.3 230,155 + -0.7 230,156 - +0.3 230,160 - +1.2 230,160 - +0.7 230,199 + -0.2 230,199 + -0.1 230,273 - -0.7 230,275 + -1.0 230,301 + -0.8 230,301 + -2.0 230,302 - +0.9 230,302 - +1.0 230,317 + -1.2 230,338 + -2.3 230,339 - +2.0 230,361 - -1.4 230,384 + +1.4 230,432 - +3.2 230,475 + +3.9 230,476 - +1.8 230,479 + +3.3 230,480 - +3.6 230,501 + +2.6 230,519 + +3.0 230,519 + +2.5 230,519 + +2.8 230,665 + LU632_RS01070 0.27 +2.2 230,665 + LU632_RS01070 0.27 +2.7 230,666 - LU632_RS01070 0.27 +3.2 230,666 - LU632_RS01070 0.27 +1.7 230,666 - LU632_RS01070 0.27 +1.4 230,752 + LU632_RS01070 0.38 +5.0 230,805 + LU632_RS01070 0.44 +2.7 230,910 - LU632_RS01070 0.57 +3.6 230,927 + LU632_RS01070 0.59 +4.6 230,945 - LU632_RS01070 0.62 +3.0 230,945 - LU632_RS01070 0.62 +2.7 230,946 + LU632_RS01070 0.62 +2.9 230,946 + LU632_RS01070 0.62 +3.4 230,981 + LU632_RS01070 0.66 +2.3 230,981 + LU632_RS01070 0.66 +2.4 231,053 - LU632_RS01070 0.75 +1.9 231,068 + LU632_RS01070 0.77 +1.4 231,072 - LU632_RS01070 0.77 +3.0 231,089 - LU632_RS01070 0.79 +2.8 231,225 - +1.6 231,249 - +1.5 231,255 + +0.8 231,255 + +0.6 231,255 + -2.1 231,255 + -2.4 231,256 - -0.1 231,256 - -1.8 231,265 - +0.6 231,265 - -0.4 231,351 + +1.7 231,370 + +0.2 231,402 - -0.0 231,402 - -0.5 231,404 + -1.7 231,481 + +1.0 231,482 - -0.7 231,484 - -1.7 231,494 + +1.0 231,514 + -0.4 231,514 + +0.7 231,672 - +1.2 231,770 - mltD LU632_RS01075 0.11 +1.9 231,770 - mltD LU632_RS01075 0.11 +4.0 231,770 - mltD LU632_RS01075 0.11 -0.4 231,770 - mltD LU632_RS01075 0.11 -0.6 231,770 - mltD LU632_RS01075 0.11 +0.6 231,770 - mltD LU632_RS01075 0.11 +1.2 231,770 - mltD LU632_RS01075 0.11 +1.2 231,771 + mltD LU632_RS01075 0.11 -2.4 231,771 + mltD LU632_RS01075 0.11 +0.1 231,771 + mltD LU632_RS01075 0.11 +0.5 231,771 + mltD LU632_RS01075 0.11 -0.7 231,772 - mltD LU632_RS01075 0.11 -0.4 231,776 - mltD LU632_RS01075 0.12 -0.4 231,776 - mltD LU632_RS01075 0.12 -2.7 231,776 - mltD LU632_RS01075 0.12 -1.5 231,777 + mltD LU632_RS01075 0.12 +1.1 231,777 + mltD LU632_RS01075 0.12 -2.0 231,777 + mltD LU632_RS01075 0.12 +0.2 231,777 + mltD LU632_RS01075 0.12 +0.5 231,777 + mltD LU632_RS01075 0.12 +0.4 231,778 - mltD LU632_RS01075 0.12 -2.3 231,778 - mltD LU632_RS01075 0.12 +1.8 231,778 - mltD LU632_RS01075 0.12 +1.2 231,778 - mltD LU632_RS01075 0.12 -0.0 231,778 - mltD LU632_RS01075 0.12 +0.3 231,954 + mltD LU632_RS01075 0.24 -0.4 231,955 - mltD LU632_RS01075 0.25 +0.0 231,955 - mltD LU632_RS01075 0.25 -0.1 231,977 - mltD LU632_RS01075 0.26 -1.0 231,977 - mltD LU632_RS01075 0.26 -0.0 232,049 - mltD LU632_RS01075 0.31 -0.2 232,064 - mltD LU632_RS01075 0.32 +4.0 232,064 - mltD LU632_RS01075 0.32 -1.4 232,069 - mltD LU632_RS01075 0.33 -0.6 232,069 - mltD LU632_RS01075 0.33 +2.0 232,252 + mltD LU632_RS01075 0.46 +0.8
Or see this region's nucleotide sequence