Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00830

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00825 and LU632_RS00830 overlap by 4 nucleotidesLU632_RS00830 and LU632_RS00835 are separated by 193 nucleotides LU632_RS00825: LU632_RS00825 - ROK family protein, at 179,731 to 180,672 _RS00825 LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694 _RS00830 LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664 _RS00835 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 179.718 kb on + strandat 179.718 kb on + strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.719 kb on - strandat 179.722 kb on + strandat 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.911 kb on + strand, within LU632_RS00825at 179.921 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.934 kb on - strand, within LU632_RS00825at 179.949 kb on + strand, within LU632_RS00825at 179.950 kb on - strand, within LU632_RS00825at 179.989 kb on + strand, within LU632_RS00825at 180.068 kb on - strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.310 kb on + strand, within LU632_RS00825at 180.311 kb on - strand, within LU632_RS00825at 180.672 kb on + strandat 180.673 kb on - strandat 180.697 kb on + strandat 180.698 kb on - strandat 180.767 kb on + strandat 180.767 kb on + strandat 180.774 kb on + strand, within LU632_RS00830at 180.774 kb on + strand, within LU632_RS00830at 180.775 kb on - strand, within LU632_RS00830at 180.829 kb on + strand, within LU632_RS00830at 180.829 kb on + strand, within LU632_RS00830at 180.830 kb on - strand, within LU632_RS00830at 180.830 kb on - strand, within LU632_RS00830at 181.069 kb on - strand, within LU632_RS00830at 181.137 kb on + strand, within LU632_RS00830at 181.140 kb on - strand, within LU632_RS00830at 181.143 kb on - strand, within LU632_RS00830at 181.183 kb on + strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.184 kb on - strand, within LU632_RS00830at 181.185 kb on + strand, within LU632_RS00830at 181.186 kb on - strand, within LU632_RS00830at 181.225 kb on + strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.226 kb on - strand, within LU632_RS00830at 181.241 kb on + strand, within LU632_RS00830at 181.334 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.370 kb on + strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.495 kb on - strand, within LU632_RS00830at 181.563 kb on + strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.564 kb on - strand, within LU632_RS00830at 181.617 kb on - strandat 181.617 kb on - strandat 181.618 kb on + strandat 181.618 kb on + strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.619 kb on - strandat 181.824 kb on + strandat 181.844 kb on + strandat 181.955 kb on + strandat 181.956 kb on - strandat 182.012 kb on + strand, within LU632_RS00835at 182.054 kb on + strand, within LU632_RS00835at 182.055 kb on - strand, within LU632_RS00835at 182.081 kb on - strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.095 kb on + strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.096 kb on - strand, within LU632_RS00835at 182.116 kb on - strand, within LU632_RS00835at 182.250 kb on - strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.322 kb on + strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.323 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.339 kb on - strand, within LU632_RS00835at 182.367 kb on + strand, within LU632_RS00835at 182.417 kb on + strand, within LU632_RS00835at 182.448 kb on + strand, within LU632_RS00835at 182.493 kb on + strand, within LU632_RS00835at 182.565 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.577 kb on + strand, within LU632_RS00835at 182.617 kb on + strandat 182.692 kb on + strandat 182.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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179,718 + +1.8
179,718 + +1.5
179,719 - -1.1
179,719 - +1.6
179,719 - -0.4
179,722 + +1.2
179,911 + LU632_RS00825 0.19 +2.1
179,911 + LU632_RS00825 0.19 +1.3
179,911 + LU632_RS00825 0.19 -2.9
179,911 + LU632_RS00825 0.19 +0.7
179,911 + LU632_RS00825 0.19 +1.7
179,921 - LU632_RS00825 0.20 -1.1
179,934 - LU632_RS00825 0.22 -2.0
179,934 - LU632_RS00825 0.22 +2.4
179,949 + LU632_RS00825 0.23 +1.2
179,950 - LU632_RS00825 0.23 +1.0
179,989 + LU632_RS00825 0.27 +0.4
180,068 - LU632_RS00825 0.36 +0.2
180,310 + LU632_RS00825 0.61 +3.0
180,310 + LU632_RS00825 0.61 +1.1
180,311 - LU632_RS00825 0.62 -1.1
180,672 + +2.8
180,673 - +1.2
180,697 + -0.4
180,698 - +3.4
180,767 + +0.6
180,767 + -2.0
180,774 + LU632_RS00830 0.10 -0.8
180,774 + LU632_RS00830 0.10 +0.8
180,775 - LU632_RS00830 0.10 -2.0
180,829 + LU632_RS00830 0.16 +1.2
180,829 + LU632_RS00830 0.16 +1.8
180,830 - LU632_RS00830 0.16 +2.4
180,830 - LU632_RS00830 0.16 +2.9
181,069 - LU632_RS00830 0.39 +1.4
181,137 + LU632_RS00830 0.46 -0.4
181,140 - LU632_RS00830 0.46 -0.4
181,143 - LU632_RS00830 0.46 +0.5
181,183 + LU632_RS00830 0.50 -2.3
181,184 - LU632_RS00830 0.50 -0.8
181,184 - LU632_RS00830 0.50 +0.4
181,184 - LU632_RS00830 0.50 -3.0
181,184 - LU632_RS00830 0.50 +0.4
181,185 + LU632_RS00830 0.50 -1.1
181,186 - LU632_RS00830 0.50 +0.9
181,225 + LU632_RS00830 0.54 +0.9
181,226 - LU632_RS00830 0.54 +3.4
181,226 - LU632_RS00830 0.54 -2.5
181,241 + LU632_RS00830 0.56 +0.2
181,334 + LU632_RS00830 0.65 +2.8
181,370 + LU632_RS00830 0.68 +1.0
181,370 + LU632_RS00830 0.68 +1.8
181,495 - LU632_RS00830 0.81 +0.2
181,495 - LU632_RS00830 0.81 +1.6
181,563 + LU632_RS00830 0.87 -0.8
181,564 - LU632_RS00830 0.87 -0.9
181,564 - LU632_RS00830 0.87 -2.0
181,617 - +1.1
181,617 - +0.7
181,618 + -0.8
181,618 + -0.2
181,619 - -0.8
181,619 - +0.0
181,619 - +3.2
181,619 - +2.2
181,824 + +0.2
181,844 + -2.7
181,955 + -1.4
181,956 - -0.4
182,012 + LU632_RS00835 0.16 +1.0
182,054 + LU632_RS00835 0.21 +4.1
182,055 - LU632_RS00835 0.21 +3.9
182,081 - LU632_RS00835 0.25 +1.2
182,095 + LU632_RS00835 0.27 +4.5
182,095 + LU632_RS00835 0.27 +3.2
182,095 + LU632_RS00835 0.27 +3.8
182,096 - LU632_RS00835 0.27 -1.0
182,096 - LU632_RS00835 0.27 +0.2
182,116 - LU632_RS00835 0.29 +4.9
182,250 - LU632_RS00835 0.47 +0.3
182,322 + LU632_RS00835 0.56 -0.8
182,322 + LU632_RS00835 0.56 +1.4
182,322 + LU632_RS00835 0.56 +4.7
182,323 - LU632_RS00835 0.56 +2.0
182,323 - LU632_RS00835 0.56 +3.8
182,323 - LU632_RS00835 0.56 +3.1
182,323 - LU632_RS00835 0.56 -1.0
182,339 - LU632_RS00835 0.58 +2.7
182,339 - LU632_RS00835 0.58 +0.4
182,339 - LU632_RS00835 0.58 +4.4
182,367 + LU632_RS00835 0.62 +3.3
182,417 + LU632_RS00835 0.68 +1.1
182,448 + LU632_RS00835 0.72 -1.8
182,493 + LU632_RS00835 0.78 +0.4
182,565 + LU632_RS00835 0.87 -2.9
182,577 + LU632_RS00835 0.89 -1.1
182,577 + LU632_RS00835 0.89 +1.1
182,617 + +0.4
182,692 + -1.3
182,692 + -0.5

Or see this region's nucleotide sequence