Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpB and kdpC are separated by 10 nucleotides kdpC and kdpD are separated by 347 nucleotides kdpD and ugpC are separated by 431 nucleotides
LU632_RS00790: kdpB - potassium-transporting ATPase subunit KdpB, at 169,273 to 171,321
kdpB
LU632_RS00795: kdpC - potassium-transporting ATPase subunit KdpC, at 171,332 to 171,919
kdpC
LU632_RS00800: kdpD - two-component system sensor histidine kinase KdpD, at 172,267 to 174,939
kdpD
LU632_RS00805: ugpC - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 175,371 to 176,495
ugpC
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 171.293 kb on + strand at 171.293 kb on + strand at 171.293 kb on + strand at 171.294 kb on - strand at 171.343 kb on - strand at 171.560 kb on + strand, within kdpC at 171.563 kb on - strand, within kdpC at 171.625 kb on - strand, within kdpC at 171.776 kb on - strand, within kdpC at 171.894 kb on + strand at 171.895 kb on - strand at 171.898 kb on + strand at 171.899 kb on - strand at 171.904 kb on + strand at 171.904 kb on + strand at 172.017 kb on + strand at 172.017 kb on + strand at 172.018 kb on - strand at 172.018 kb on - strand at 172.018 kb on - strand at 172.018 kb on - strand at 172.020 kb on - strand at 172.092 kb on + strand at 172.093 kb on - strand at 172.164 kb on + strand at 172.175 kb on + strand at 172.175 kb on + strand at 172.262 kb on + strand at 172.263 kb on - strand at 172.267 kb on - strand at 172.267 kb on - strand at 172.267 kb on - strand at 172.267 kb on - strand at 172.627 kb on - strand, within kdpD at 172.668 kb on + strand, within kdpD at 172.849 kb on + strand, within kdpD at 172.850 kb on - strand, within kdpD at 172.850 kb on - strand, within kdpD at 172.850 kb on - strand, within kdpD at 172.894 kb on - strand, within kdpD at 173.029 kb on - strand, within kdpD at 173.029 kb on - strand, within kdpD at 173.029 kb on - strand, within kdpD at 173.029 kb on - strand, within kdpD at 173.114 kb on - strand, within kdpD at 173.455 kb on - strand, within kdpD at 173.551 kb on + strand, within kdpD at 173.551 kb on + strand, within kdpD at 173.551 kb on + strand, within kdpD at 173.552 kb on - strand, within kdpD at 173.584 kb on + strand, within kdpD at 173.686 kb on + strand, within kdpD at 173.686 kb on + strand, within kdpD at 173.740 kb on - strand, within kdpD at 173.955 kb on + strand, within kdpD at 174.353 kb on + strand, within kdpD at 174.353 kb on + strand, within kdpD at 174.393 kb on + strand, within kdpD at 174.393 kb on + strand, within kdpD at 174.393 kb on + strand, within kdpD at 174.394 kb on - strand, within kdpD at 174.394 kb on - strand, within kdpD at 174.438 kb on - strand, within kdpD at 174.542 kb on + strand, within kdpD at 174.813 kb on + strand at 174.931 kb on + strand at 175.146 kb on + strand at 175.146 kb on + strand at 175.233 kb on + strand at 175.234 kb on - strand at 175.332 kb on + strand at 175.332 kb on + strand at 175.333 kb on - strand at 175.333 kb on - strand at 175.372 kb on + strand at 175.373 kb on - strand at 175.532 kb on + strand, within ugpC at 175.724 kb on + strand, within ugpC at 175.930 kb on + strand, within ugpC at 175.930 kb on + strand, within ugpC at 175.931 kb on - strand, within ugpC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 171,293 + -2.0 171,293 + -1.4 171,293 + -0.3 171,294 - +0.5 171,343 - -1.3 171,560 + kdpC LU632_RS00795 0.39 +2.7 171,563 - kdpC LU632_RS00795 0.39 +0.9 171,625 - kdpC LU632_RS00795 0.50 -0.4 171,776 - kdpC LU632_RS00795 0.76 -0.1 171,894 + +0.2 171,895 - -1.3 171,898 + +0.3 171,899 - +1.0 171,904 + -0.4 171,904 + +0.1 172,017 + +0.4 172,017 + -1.7 172,018 - -0.7 172,018 - +1.2 172,018 - +1.2 172,018 - +0.9 172,020 - -0.1 172,092 + -2.4 172,093 - +1.6 172,164 + +0.4 172,175 + +1.5 172,175 + -0.6 172,262 + +1.2 172,263 - +1.0 172,267 - -0.9 172,267 - +0.8 172,267 - -0.8 172,267 - -2.8 172,627 - kdpD LU632_RS00800 0.13 -0.4 172,668 + kdpD LU632_RS00800 0.15 -0.8 172,849 + kdpD LU632_RS00800 0.22 +1.4 172,850 - kdpD LU632_RS00800 0.22 +1.6 172,850 - kdpD LU632_RS00800 0.22 +2.2 172,850 - kdpD LU632_RS00800 0.22 +0.8 172,894 - kdpD LU632_RS00800 0.23 +5.4 173,029 - kdpD LU632_RS00800 0.29 +1.8 173,029 - kdpD LU632_RS00800 0.29 +0.2 173,029 - kdpD LU632_RS00800 0.29 +2.6 173,029 - kdpD LU632_RS00800 0.29 +0.0 173,114 - kdpD LU632_RS00800 0.32 +2.2 173,455 - kdpD LU632_RS00800 0.44 +1.4 173,551 + kdpD LU632_RS00800 0.48 +0.7 173,551 + kdpD LU632_RS00800 0.48 +2.7 173,551 + kdpD LU632_RS00800 0.48 -0.1 173,552 - kdpD LU632_RS00800 0.48 +0.3 173,584 + kdpD LU632_RS00800 0.49 -1.8 173,686 + kdpD LU632_RS00800 0.53 +4.7 173,686 + kdpD LU632_RS00800 0.53 +3.7 173,740 - kdpD LU632_RS00800 0.55 +1.2 173,955 + kdpD LU632_RS00800 0.63 +0.2 174,353 + kdpD LU632_RS00800 0.78 +0.7 174,353 + kdpD LU632_RS00800 0.78 -0.4 174,393 + kdpD LU632_RS00800 0.80 +0.9 174,393 + kdpD LU632_RS00800 0.80 +1.1 174,393 + kdpD LU632_RS00800 0.80 +0.6 174,394 - kdpD LU632_RS00800 0.80 -1.1 174,394 - kdpD LU632_RS00800 0.80 -0.6 174,438 - kdpD LU632_RS00800 0.81 -1.4 174,542 + kdpD LU632_RS00800 0.85 +0.4 174,813 + -2.0 174,931 + -0.7 175,146 + +2.6 175,146 + +0.7 175,233 + +0.2 175,234 - -0.4 175,332 + +0.2 175,332 + +0.6 175,333 - -1.6 175,333 - +1.1 175,372 + +2.2 175,373 - -0.2 175,532 + ugpC LU632_RS00805 0.14 -2.3 175,724 + ugpC LU632_RS00805 0.31 +0.4 175,930 + ugpC LU632_RS00805 0.50 +1.3 175,930 + ugpC LU632_RS00805 0.50 -1.2 175,931 - ugpC LU632_RS00805 0.50 -0.2
Or see this region's nucleotide sequence