Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00700 and LU632_RS00705 overlap by 13 nucleotides LU632_RS00705 and tssB are separated by 124 nucleotides tssB and tssC are separated by 17 nucleotides
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 148.550 kb on - strand, within LU632_RS00700 at 148.550 kb on - strand, within LU632_RS00700 at 148.648 kb on + strand, within LU632_RS00700 at 148.679 kb on - strand, within LU632_RS00700 at 148.680 kb on + strand, within LU632_RS00700 at 148.683 kb on + strand, within LU632_RS00700 at 148.684 kb on - strand, within LU632_RS00700 at 148.757 kb on - strand, within LU632_RS00700 at 148.759 kb on - strand, within LU632_RS00700 at 148.834 kb on + strand, within LU632_RS00700 at 148.889 kb on + strand, within LU632_RS00700 at 148.890 kb on - strand, within LU632_RS00700 at 148.928 kb on + strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.932 kb on + strand, within LU632_RS00700 at 149.088 kb on - strand, within LU632_RS00700 at 149.166 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.319 kb on - strand at 149.322 kb on + strand at 149.323 kb on - strand at 149.349 kb on + strand at 149.350 kb on - strand at 149.429 kb on + strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.435 kb on + strand at 149.435 kb on + strand at 149.639 kb on - strand, within LU632_RS00705 at 149.664 kb on + strand, within LU632_RS00705 at 149.694 kb on - strand, within LU632_RS00705 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.641 kb on - strand, within tssB at 150.795 kb on - strand at 150.795 kb on - strand at 150.809 kb on + strand at 151.029 kb on - strand, within tssC at 151.104 kb on - strand, within tssC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 148,550 - LU632_RS00700 0.62 +2.2 148,550 - LU632_RS00700 0.62 +0.4 148,648 + LU632_RS00700 0.66 -0.8 148,679 - LU632_RS00700 0.67 -1.7 148,680 + LU632_RS00700 0.67 +0.2 148,683 + LU632_RS00700 0.67 +2.9 148,684 - LU632_RS00700 0.67 +1.2 148,757 - LU632_RS00700 0.70 -0.3 148,759 - LU632_RS00700 0.70 -2.0 148,834 + LU632_RS00700 0.73 +1.2 148,889 + LU632_RS00700 0.75 +0.3 148,890 - LU632_RS00700 0.75 +1.4 148,928 + LU632_RS00700 0.77 +0.5 148,929 - LU632_RS00700 0.77 +0.2 148,929 - LU632_RS00700 0.77 -2.1 148,929 - LU632_RS00700 0.77 -1.3 148,929 - LU632_RS00700 0.77 +1.2 148,929 - LU632_RS00700 0.77 -0.1 148,932 + LU632_RS00700 0.77 +0.2 149,088 - LU632_RS00700 0.83 +2.7 149,166 + LU632_RS00700 0.86 +0.7 149,174 + LU632_RS00700 0.86 -2.8 149,174 + LU632_RS00700 0.86 -1.1 149,319 - +2.8 149,322 + +0.5 149,323 - +1.2 149,349 + -1.3 149,350 - -0.4 149,429 + +2.3 149,432 - +0.8 149,432 - -0.4 149,432 - +0.5 149,435 + -1.2 149,435 + -0.2 149,639 - LU632_RS00705 0.19 +0.8 149,664 + LU632_RS00705 0.23 +1.5 149,694 - LU632_RS00705 0.28 +2.2 149,787 - LU632_RS00705 0.44 +0.1 150,021 + LU632_RS00705 0.85 +1.4 150,033 + LU632_RS00705 0.87 +0.9 150,299 + tssB LU632_RS00710 0.12 -0.2 150,374 + tssB LU632_RS00710 0.26 -0.1 150,640 + tssB LU632_RS00710 0.76 -0.8 150,640 + tssB LU632_RS00710 0.76 -0.8 150,640 + tssB LU632_RS00710 0.76 -0.3 150,641 - tssB LU632_RS00710 0.76 -2.1 150,795 - -1.6 150,795 - -0.1 150,809 + +1.6 151,029 - tssC LU632_RS00715 0.16 -0.4 151,104 - tssC LU632_RS00715 0.21 +0.4
Or see this region's nucleotide sequence