Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00610 and kduD are separated by 42 nucleotides kduD and LU632_RS00620 are separated by 13 nucleotides LU632_RS00620 and LU632_RS00625 are separated by 22 nucleotides
LU632_RS00610: LU632_RS00610 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 125,095 to 125,736
_RS00610
LU632_RS00615: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 125,779 to 126,540
kduD
LU632_RS00620: LU632_RS00620 - glycoside hydrolase family 88 protein, at 126,554 to 127,693
_RS00620
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 125.578 kb on - strand, within LU632_RS00610 at 125.594 kb on + strand, within LU632_RS00610 at 125.595 kb on - strand, within LU632_RS00610 at 125.634 kb on + strand, within LU632_RS00610 at 125.634 kb on + strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.635 kb on - strand, within LU632_RS00610 at 125.639 kb on - strand, within LU632_RS00610 at 125.672 kb on - strand at 125.825 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.827 kb on - strand at 125.828 kb on + strand at 125.828 kb on + strand at 125.828 kb on + strand at 125.829 kb on - strand at 125.829 kb on - strand at 126.000 kb on + strand, within kduD at 126.000 kb on + strand, within kduD at 126.000 kb on + strand, within kduD at 126.001 kb on - strand, within kduD at 126.005 kb on + strand, within kduD at 126.006 kb on - strand, within kduD at 126.578 kb on + strand at 126.622 kb on + strand at 126.623 kb on - strand at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.706 kb on + strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.707 kb on - strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.751 kb on - strand, within LU632_RS00620 at 126.766 kb on - strand, within LU632_RS00620 at 126.829 kb on - strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 127.085 kb on + strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.113 kb on + strand, within LU632_RS00620 at 127.131 kb on + strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.462 kb on - strand, within LU632_RS00620 at 127.464 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.474 kb on + strand, within LU632_RS00620 at 127.475 kb on - strand, within LU632_RS00620 at 127.606 kb on + strand at 127.612 kb on + strand at 127.676 kb on + strand at 127.683 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.702 kb on - strand at 127.827 kb on - strand at 127.983 kb on - strand, within LU632_RS00625 at 127.998 kb on - strand, within LU632_RS00625 at 128.055 kb on - strand, within LU632_RS00625 at 128.168 kb on + strand, within LU632_RS00625 at 128.181 kb on + strand, within LU632_RS00625 at 128.227 kb on - strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.236 kb on + strand, within LU632_RS00625 at 128.237 kb on - strand, within LU632_RS00625 at 128.240 kb on + strand, within LU632_RS00625 at 128.241 kb on - strand, within LU632_RS00625 at 128.254 kb on + strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.333 kb on - strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.374 kb on - strand, within LU632_RS00625 at 128.414 kb on + strand, within LU632_RS00625 at 128.415 kb on - strand, within LU632_RS00625 at 128.451 kb on + strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.505 kb on + strand, within LU632_RS00625 at 128.506 kb on - strand, within LU632_RS00625 at 128.511 kb on + strand, within LU632_RS00625 at 128.519 kb on - strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.522 kb on - strand, within LU632_RS00625 at 128.526 kb on - strand, within LU632_RS00625 at 128.556 kb on - strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.601 kb on - strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.627 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.638 kb on - strand, within LU632_RS00625
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 125,578 - LU632_RS00610 0.75 -0.4 125,594 + LU632_RS00610 0.78 +1.8 125,595 - LU632_RS00610 0.78 -0.8 125,634 + LU632_RS00610 0.84 -1.5 125,634 + LU632_RS00610 0.84 -1.9 125,635 - LU632_RS00610 0.84 +0.4 125,635 - LU632_RS00610 0.84 +0.0 125,635 - LU632_RS00610 0.84 -1.4 125,639 - LU632_RS00610 0.85 -1.4 125,672 - -1.6 125,825 - +0.4 125,827 - +0.3 125,827 - +0.2 125,827 - -1.1 125,827 - -1.9 125,827 - +1.3 125,828 + +1.6 125,828 + +0.1 125,828 + -0.0 125,829 - +0.8 125,829 - +0.9 126,000 + kduD LU632_RS00615 0.29 -3.3 126,000 + kduD LU632_RS00615 0.29 +0.3 126,000 + kduD LU632_RS00615 0.29 +1.9 126,001 - kduD LU632_RS00615 0.29 +0.6 126,005 + kduD LU632_RS00615 0.30 -0.0 126,006 - kduD LU632_RS00615 0.30 +0.5 126,578 + +0.2 126,622 + +0.6 126,623 - -0.8 126,706 + LU632_RS00620 0.13 -1.5 126,706 + LU632_RS00620 0.13 +0.2 126,706 + LU632_RS00620 0.13 +1.3 126,706 + LU632_RS00620 0.13 +1.2 126,707 - LU632_RS00620 0.13 +0.4 126,707 - LU632_RS00620 0.13 +0.8 126,707 - LU632_RS00620 0.13 +1.8 126,750 + LU632_RS00620 0.17 -1.0 126,750 + LU632_RS00620 0.17 +1.0 126,751 - LU632_RS00620 0.17 -0.1 126,766 - LU632_RS00620 0.19 +0.5 126,829 - LU632_RS00620 0.24 +0.3 126,997 + LU632_RS00620 0.39 +3.5 126,997 + LU632_RS00620 0.39 -0.6 127,085 + LU632_RS00620 0.47 +0.9 127,086 - LU632_RS00620 0.47 -2.0 127,086 - LU632_RS00620 0.47 -1.4 127,113 + LU632_RS00620 0.49 -0.4 127,131 + LU632_RS00620 0.51 +1.3 127,132 - LU632_RS00620 0.51 +1.2 127,132 - LU632_RS00620 0.51 +0.9 127,462 - LU632_RS00620 0.80 -1.1 127,464 + LU632_RS00620 0.80 +2.2 127,470 + LU632_RS00620 0.80 -0.5 127,470 + LU632_RS00620 0.80 -1.4 127,470 + LU632_RS00620 0.80 +1.6 127,470 + LU632_RS00620 0.80 -0.4 127,470 + LU632_RS00620 0.80 -0.4 127,470 + LU632_RS00620 0.80 -0.0 127,471 - LU632_RS00620 0.80 -0.2 127,471 - LU632_RS00620 0.80 -0.1 127,474 + LU632_RS00620 0.81 -2.1 127,475 - LU632_RS00620 0.81 -1.0 127,606 + +0.2 127,612 + +0.0 127,676 + +0.6 127,683 + +0.2 127,685 + -0.5 127,685 + +1.2 127,685 + -0.1 127,686 - -0.2 127,686 - +1.3 127,686 - +0.8 127,702 - -1.8 127,827 - -2.0 127,983 - LU632_RS00625 0.17 -1.3 127,998 - LU632_RS00625 0.18 +1.2 128,055 - LU632_RS00625 0.21 -1.6 128,168 + LU632_RS00625 0.28 +0.0 128,181 + LU632_RS00625 0.29 -0.7 128,227 - LU632_RS00625 0.32 +0.6 128,230 + LU632_RS00625 0.32 -1.2 128,230 + LU632_RS00625 0.32 +0.7 128,230 + LU632_RS00625 0.32 -0.0 128,230 + LU632_RS00625 0.32 -0.8 128,230 + LU632_RS00625 0.32 -0.4 128,230 + LU632_RS00625 0.32 +0.0 128,230 + LU632_RS00625 0.32 +0.3 128,230 + LU632_RS00625 0.32 -0.2 128,231 - LU632_RS00625 0.32 -0.2 128,231 - LU632_RS00625 0.32 +1.4 128,231 - LU632_RS00625 0.32 +1.2 128,231 - LU632_RS00625 0.32 +1.2 128,231 - LU632_RS00625 0.32 +0.2 128,236 + LU632_RS00625 0.32 -0.3 128,237 - LU632_RS00625 0.32 -0.1 128,240 + LU632_RS00625 0.33 +0.7 128,241 - LU632_RS00625 0.33 +3.1 128,254 + LU632_RS00625 0.34 +0.9 128,255 - LU632_RS00625 0.34 +0.7 128,255 - LU632_RS00625 0.34 +0.9 128,255 - LU632_RS00625 0.34 -0.0 128,255 - LU632_RS00625 0.34 -0.4 128,258 + LU632_RS00625 0.34 -1.6 128,258 + LU632_RS00625 0.34 -3.5 128,259 - LU632_RS00625 0.34 +0.8 128,259 - LU632_RS00625 0.34 -0.4 128,259 - LU632_RS00625 0.34 +0.0 128,333 - LU632_RS00625 0.38 +0.2 128,347 + LU632_RS00625 0.39 +0.8 128,347 + LU632_RS00625 0.39 +0.5 128,374 - LU632_RS00625 0.41 +0.5 128,414 + LU632_RS00625 0.43 +0.6 128,415 - LU632_RS00625 0.44 +0.6 128,451 + LU632_RS00625 0.46 -0.6 128,452 - LU632_RS00625 0.46 -3.1 128,452 - LU632_RS00625 0.46 +0.4 128,505 + LU632_RS00625 0.49 +0.6 128,506 - LU632_RS00625 0.49 +0.6 128,511 + LU632_RS00625 0.50 +4.8 128,519 - LU632_RS00625 0.50 -1.6 128,521 + LU632_RS00625 0.50 +0.9 128,521 + LU632_RS00625 0.50 -1.8 128,522 - LU632_RS00625 0.50 +2.9 128,526 - LU632_RS00625 0.50 +0.2 128,556 - LU632_RS00625 0.52 -0.7 128,557 + LU632_RS00625 0.52 -1.4 128,557 + LU632_RS00625 0.52 -2.1 128,557 + LU632_RS00625 0.52 -2.9 128,557 + LU632_RS00625 0.52 +0.6 128,558 - LU632_RS00625 0.52 -0.9 128,558 - LU632_RS00625 0.52 +0.7 128,569 + LU632_RS00625 0.53 -0.6 128,569 + LU632_RS00625 0.53 -0.5 128,570 - LU632_RS00625 0.53 +0.1 128,570 - LU632_RS00625 0.53 +1.0 128,600 + LU632_RS00625 0.55 +0.2 128,600 + LU632_RS00625 0.55 -0.3 128,601 - LU632_RS00625 0.55 +0.8 128,604 + LU632_RS00625 0.55 +0.0 128,604 + LU632_RS00625 0.55 +1.6 128,604 + LU632_RS00625 0.55 -1.6 128,605 - LU632_RS00625 0.55 +1.2 128,605 - LU632_RS00625 0.55 +1.2 128,627 + LU632_RS00625 0.57 +2.2 128,637 + LU632_RS00625 0.57 +3.5 128,637 + LU632_RS00625 0.57 +0.0 128,638 - LU632_RS00625 0.57 -0.9
Or see this region's nucleotide sequence