Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00575

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
118,284	-		LU632_RS00570	0.47	-0.5
118,288	+		LU632_RS00570	0.49	-1.6
118,370	+		LU632_RS00570	0.82	+0.9
118,370	+		LU632_RS00570	0.82	-1.3
118,370	+		LU632_RS00570	0.82	-1.2
118,371	-		LU632_RS00570	0.83	-0.7
118,371	-		LU632_RS00570	0.83	+1.4
118,371	-		LU632_RS00570	0.83	+1.2
118,374	+		LU632_RS00570	0.84	-0.2
118,375	-		LU632_RS00570	0.84	+1.4
118,385	+		LU632_RS00570	0.88	-1.6
118,436	+				-1.1
118,438	+				+0.7
118,439	-				-2.6
118,518	-				+0.6
118,558	-				-1.4
118,611	+				-0.1
118,611	+				-1.9
118,679	-				-0.4
118,715	-				+0.2
118,715	-				-1.0
118,736	+				-2.0
118,766	+				+0.0
118,805	+				+0.4
118,825	+				-0.6
118,826	-				-1.5
118,826	-				+0.5
118,888	+				-2.2
118,888	+				+1.2
118,936	+				+0.1
118,936	+				-2.1
118,959	+				-1.2
119,222	+				+0.4
119,223	-				+0.3
119,224	+				-0.5
119,224	+				-1.2
119,421	+	mntP	LU632_RS00575	0.34	+0.4
119,421	+	mntP	LU632_RS00575	0.34	-0.1
119,422	-	mntP	LU632_RS00575	0.34	+0.4
119,422	-	mntP	LU632_RS00575	0.34	+0.9
119,453	+	mntP	LU632_RS00575	0.39	+1.5
119,454	-	mntP	LU632_RS00575	0.40	-2.3
119,624	+	mntP	LU632_RS00575	0.70	+1.2
119,624	+	mntP	LU632_RS00575	0.70	+1.2
119,845	-				-1.4
120,029	+				+2.8
120,029	+				+0.6
120,103	-				-3.0
120,117	+				+0.9
120,117	+				-0.6
120,135	+				+0.3
120,258	-				-0.0
120,267	+				-0.3
120,269	+				+3.3
120,270	-				-0.1
120,270	-				+2.5
120,370	+		LU632_RS00580	0.12	+1.2
120,371	-		LU632_RS00580	0.12	-2.9
120,381	+		LU632_RS00580	0.14	-0.1
120,382	-		LU632_RS00580	0.14	-0.1
120,417	+		LU632_RS00580	0.18	-0.8
120,466	+		LU632_RS00580	0.25	-0.4
120,466	+		LU632_RS00580	0.25	-1.6
120,466	+		LU632_RS00580	0.25	-0.0
120,467	-		LU632_RS00580	0.25	-0.4
120,467	-		LU632_RS00580	0.25	+0.7
120,467	-		LU632_RS00580	0.25	-0.4
120,467	-		LU632_RS00580	0.25	-0.3
120,501	-		LU632_RS00580	0.30	-0.8
120,612	-		LU632_RS00580	0.45	+1.2
120,614	+		LU632_RS00580	0.45	+0.7
120,615	-		LU632_RS00580	0.45	+0.3
120,615	-		LU632_RS00580	0.45	-0.6
120,632	+		LU632_RS00580	0.48	+1.4
120,635	+		LU632_RS00580	0.48	-2.2
120,635	+		LU632_RS00580	0.48	+1.2
120,732	+		LU632_RS00580	0.61	-0.3
120,732	+		LU632_RS00580	0.61	-0.8
120,732	+		LU632_RS00580	0.61	-1.8
120,732	+		LU632_RS00580	0.61	-2.5
120,732	+		LU632_RS00580	0.61	-0.1
120,732	+		LU632_RS00580	0.61	+1.9
120,732	+		LU632_RS00580	0.61	-0.5
120,733	-		LU632_RS00580	0.62	+2.6
120,735	-		LU632_RS00580	0.62	+0.8
120,735	-		LU632_RS00580	0.62	+2.2