Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00460 and LU632_RS00465 are separated by 9 nucleotides LU632_RS00465 and sctN are separated by 18 nucleotides
LU632_RS00460: LU632_RS00460 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 94,952 to 97,006
_RS00460
LU632_RS00465: LU632_RS00465 - type III secretion system protein, at 97,016 to 97,423
_RS00465
LU632_RS00470: sctN - type III secretion system ATPase SctN, at 97,442 to 98,737
sctN
Position (kb) 97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.206 kb on + strand, within LU632_RS00460 at 96.241 kb on - strand, within LU632_RS00460 at 96.559 kb on + strand, within LU632_RS00460 at 96.661 kb on - strand, within LU632_RS00460 at 96.715 kb on + strand, within LU632_RS00460 at 96.715 kb on + strand, within LU632_RS00460 at 96.862 kb on + strand at 97.033 kb on - strand at 97.039 kb on - strand at 97.144 kb on - strand, within LU632_RS00465 at 97.479 kb on + strand at 97.483 kb on + strand at 97.536 kb on + strand at 97.537 kb on - strand at 97.612 kb on + strand, within sctN at 97.657 kb on + strand, within sctN at 97.658 kb on - strand, within sctN at 97.663 kb on + strand, within sctN at 97.664 kb on - strand, within sctN at 97.666 kb on - strand, within sctN at 97.793 kb on + strand, within sctN at 97.794 kb on - strand, within sctN at 97.909 kb on + strand, within sctN at 97.910 kb on - strand, within sctN at 97.957 kb on + strand, within sctN at 97.958 kb on - strand, within sctN at 98.107 kb on + strand, within sctN at 98.108 kb on - strand, within sctN at 98.198 kb on - strand, within sctN at 98.208 kb on - strand, within sctN at 98.236 kb on + strand, within sctN at 98.236 kb on + strand, within sctN at 98.240 kb on - strand, within sctN at 98.359 kb on - strand, within sctN at 98.412 kb on + strand, within sctN
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 96,206 + LU632_RS00460 0.61 +1.2 96,241 - LU632_RS00460 0.63 +0.6 96,559 + LU632_RS00460 0.78 -0.1 96,661 - LU632_RS00460 0.83 -1.6 96,715 + LU632_RS00460 0.86 -0.3 96,715 + LU632_RS00460 0.86 +0.5 96,862 + +0.5 97,033 - +0.1 97,039 - -1.5 97,144 - LU632_RS00465 0.31 +1.3 97,479 + -1.7 97,483 + -2.7 97,536 + -0.9 97,537 - +0.2 97,612 + sctN LU632_RS00470 0.13 +1.1 97,657 + sctN LU632_RS00470 0.17 -0.4 97,658 - sctN LU632_RS00470 0.17 +1.2 97,663 + sctN LU632_RS00470 0.17 +0.2 97,664 - sctN LU632_RS00470 0.17 +1.3 97,666 - sctN LU632_RS00470 0.17 -3.1 97,793 + sctN LU632_RS00470 0.27 -1.9 97,794 - sctN LU632_RS00470 0.27 +0.6 97,909 + sctN LU632_RS00470 0.36 -0.5 97,910 - sctN LU632_RS00470 0.36 +1.5 97,957 + sctN LU632_RS00470 0.40 -0.5 97,958 - sctN LU632_RS00470 0.40 -1.8 98,107 + sctN LU632_RS00470 0.51 +1.5 98,108 - sctN LU632_RS00470 0.51 +1.4 98,198 - sctN LU632_RS00470 0.58 -0.0 98,208 - sctN LU632_RS00470 0.59 +1.1 98,236 + sctN LU632_RS00470 0.61 -2.1 98,236 + sctN LU632_RS00470 0.61 +0.6 98,240 - sctN LU632_RS00470 0.62 -0.1 98,359 - sctN LU632_RS00470 0.71 -2.4 98,412 + sctN LU632_RS00470 0.75 +0.4
Or see this region's nucleotide sequence