Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00395 and LU632_RS00400 are separated by 479 nucleotides LU632_RS00400 and LU632_RS00405 are separated by 132 nucleotides
LU632_RS00395: LU632_RS00395 - AsmA family protein, at 82,211 to 84,226
_RS00395
LU632_RS00400: LU632_RS00400 - hypothetical protein, at 84,706 to 85,437
_RS00400
LU632_RS00405: LU632_RS00405 - IS5 family transposase, at 85,570 to 86,375
_RS00405
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 83.718 kb on - strand, within LU632_RS00395 at 83.815 kb on - strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.859 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.879 kb on + strand, within LU632_RS00395 at 83.880 kb on - strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.939 kb on + strand, within LU632_RS00395 at 83.942 kb on + strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.943 kb on - strand, within LU632_RS00395 at 83.946 kb on - strand, within LU632_RS00395 at 83.957 kb on + strand, within LU632_RS00395 at 84.013 kb on + strand, within LU632_RS00395 at 84.016 kb on + strand, within LU632_RS00395 at 84.017 kb on - strand, within LU632_RS00395 at 84.038 kb on + strand at 84.038 kb on + strand at 84.039 kb on - strand at 84.172 kb on + strand at 84.174 kb on - strand at 84.256 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand at 84.311 kb on - strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.327 kb on + strand at 84.328 kb on - strand at 84.487 kb on + strand at 84.494 kb on + strand at 84.495 kb on - strand at 84.531 kb on - strand at 84.556 kb on + strand at 84.603 kb on + strand at 84.605 kb on + strand at 84.680 kb on - strand at 84.900 kb on + strand, within LU632_RS00400 at 85.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 83,718 - LU632_RS00395 0.75 +1.2 83,815 - LU632_RS00395 0.80 -2.2 83,859 + LU632_RS00395 0.82 +1.4 83,859 + LU632_RS00395 0.82 -1.0 83,879 + LU632_RS00395 0.83 -0.0 83,879 + LU632_RS00395 0.83 +2.2 83,880 - LU632_RS00395 0.83 +0.8 83,939 + LU632_RS00395 0.86 +1.5 83,939 + LU632_RS00395 0.86 -2.8 83,942 + LU632_RS00395 0.86 -2.1 83,943 - LU632_RS00395 0.86 -1.6 83,943 - LU632_RS00395 0.86 -2.1 83,946 - LU632_RS00395 0.86 +0.4 83,957 + LU632_RS00395 0.87 +0.6 84,013 + LU632_RS00395 0.89 +0.2 84,016 + LU632_RS00395 0.90 -0.2 84,017 - LU632_RS00395 0.90 -0.8 84,038 + -2.3 84,038 + +3.0 84,039 - -0.6 84,172 + -2.2 84,174 - +0.8 84,256 - +0.1 84,310 + +1.5 84,310 + -1.2 84,310 + -0.4 84,310 + -1.8 84,311 - -0.4 84,311 - +0.5 84,327 + -1.6 84,327 + -1.1 84,327 + +1.8 84,328 - -1.1 84,487 + -0.0 84,494 + -0.6 84,495 - +1.0 84,531 - -2.4 84,556 + +0.1 84,603 + +0.7 84,605 + +0.1 84,680 - -0.7 84,900 + LU632_RS00400 0.27 +3.8 85,510 + +0.1
Or see this region's nucleotide sequence