Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00310

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00305 and LU632_RS00310 are separated by 121 nucleotidesLU632_RS00310 and LU632_RS00315 are separated by 408 nucleotides LU632_RS00305: LU632_RS00305 - glycosyl hydrolase family 8, at 61,756 to 62,675 _RS00305 LU632_RS00310: LU632_RS00310 - DUF2235 domain-containing protein, at 62,797 to 64,257 _RS00310 LU632_RS00315: LU632_RS00315 - Bpu10I family restriction endonuclease, at 64,666 to 65,562 _RS00315 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 61.854 kb on + strand, within LU632_RS00305at 61.854 kb on + strand, within LU632_RS00305at 61.855 kb on - strand, within LU632_RS00305at 61.857 kb on + strand, within LU632_RS00305at 61.858 kb on - strand, within LU632_RS00305at 61.859 kb on + strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.909 kb on - strand, within LU632_RS00305at 61.956 kb on - strand, within LU632_RS00305at 62.071 kb on - strand, within LU632_RS00305at 62.077 kb on + strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.155 kb on + strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.393 kb on - strand, within LU632_RS00305at 62.416 kb on + strand, within LU632_RS00305at 62.482 kb on + strand, within LU632_RS00305at 62.491 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.525 kb on + strand, within LU632_RS00305at 62.526 kb on - strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.622 kb on + strandat 62.626 kb on - strandat 62.691 kb on - strandat 62.762 kb on + strandat 62.762 kb on + strandat 62.762 kb on + strandat 62.775 kb on - strandat 62.797 kb on - strandat 62.856 kb on + strandat 62.974 kb on + strand, within LU632_RS00310at 62.975 kb on - strand, within LU632_RS00310at 62.975 kb on - strand, within LU632_RS00310at 62.997 kb on + strand, within LU632_RS00310at 63.004 kb on + strand, within LU632_RS00310at 63.052 kb on + strand, within LU632_RS00310at 63.053 kb on - strand, within LU632_RS00310at 63.063 kb on + strand, within LU632_RS00310at 63.066 kb on - strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.069 kb on + strand, within LU632_RS00310at 63.070 kb on - strand, within LU632_RS00310at 63.070 kb on - strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.297 kb on + strand, within LU632_RS00310at 63.298 kb on - strand, within LU632_RS00310at 63.298 kb on - strand, within LU632_RS00310at 63.353 kb on - strand, within LU632_RS00310at 63.425 kb on + strand, within LU632_RS00310at 63.464 kb on + strand, within LU632_RS00310at 63.758 kb on + strand, within LU632_RS00310at 63.807 kb on + strand, within LU632_RS00310at 63.808 kb on - strand, within LU632_RS00310at 63.963 kb on + strand, within LU632_RS00310at 63.963 kb on + strand, within LU632_RS00310at 64.227 kb on + strandat 64.227 kb on + strandat 64.227 kb on + strandat 64.228 kb on - strandat 64.228 kb on - strandat 64.228 kb on - strandat 64.228 kb on - strandat 64.255 kb on + strandat 64.301 kb on - strandat 64.375 kb on - strandat 64.435 kb on + strandat 64.436 kb on - strandat 64.536 kb on + strandat 64.537 kb on - strandat 64.537 kb on - strandat 64.537 kb on - strandat 64.537 kb on - strandat 64.537 kb on - strandat 64.538 kb on + strandat 64.538 kb on + strandat 64.539 kb on - strandat 64.609 kb on - strandat 64.667 kb on + strandat 64.669 kb on + strandat 64.673 kb on - strandat 64.673 kb on - strandat 64.787 kb on + strand, within LU632_RS00315at 64.788 kb on - strand, within LU632_RS00315at 64.800 kb on - strand, within LU632_RS00315at 64.956 kb on + strand, within LU632_RS00315at 65.148 kb on - strand, within LU632_RS00315

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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61,854 + LU632_RS00305 0.11 +1.7
61,854 + LU632_RS00305 0.11 -0.4
61,855 - LU632_RS00305 0.11 -1.3
61,857 + LU632_RS00305 0.11 +0.8
61,858 - LU632_RS00305 0.11 +0.6
61,859 + LU632_RS00305 0.11 -1.4
61,860 - LU632_RS00305 0.11 -0.2
61,860 - LU632_RS00305 0.11 +0.2
61,860 - LU632_RS00305 0.11 +1.3
61,860 - LU632_RS00305 0.11 -1.1
61,909 - LU632_RS00305 0.17 +1.3
61,956 - LU632_RS00305 0.22 +2.9
62,071 - LU632_RS00305 0.34 -0.7
62,077 + LU632_RS00305 0.35 +0.5
62,145 - LU632_RS00305 0.42 -2.3
62,145 - LU632_RS00305 0.42 -0.2
62,155 + LU632_RS00305 0.43 +0.0
62,188 - LU632_RS00305 0.47 +0.2
62,188 - LU632_RS00305 0.47 +0.2
62,188 - LU632_RS00305 0.47 +1.8
62,392 + LU632_RS00305 0.69 +1.2
62,392 + LU632_RS00305 0.69 -0.0
62,393 - LU632_RS00305 0.69 -0.1
62,416 + LU632_RS00305 0.72 +1.3
62,482 + LU632_RS00305 0.79 -0.4
62,491 - LU632_RS00305 0.80 -2.1
62,523 - LU632_RS00305 0.83 +0.6
62,523 - LU632_RS00305 0.83 -1.0
62,525 + LU632_RS00305 0.84 -1.1
62,526 - LU632_RS00305 0.84 +1.0
62,537 + LU632_RS00305 0.85 -0.9
62,537 + LU632_RS00305 0.85 +0.2
62,537 + LU632_RS00305 0.85 -0.2
62,537 + LU632_RS00305 0.85 -1.4
62,537 + LU632_RS00305 0.85 +0.5
62,538 - LU632_RS00305 0.85 -1.6
62,538 - LU632_RS00305 0.85 +0.0
62,538 - LU632_RS00305 0.85 -0.7
62,538 - LU632_RS00305 0.85 -0.4
62,538 - LU632_RS00305 0.85 +1.6
62,622 + -1.8
62,626 - +0.5
62,691 - +0.7
62,762 + -0.4
62,762 + -0.4
62,762 + -1.4
62,775 - -2.8
62,797 - -1.9
62,856 + +1.3
62,974 + LU632_RS00310 0.12 +2.0
62,975 - LU632_RS00310 0.12 +0.5
62,975 - LU632_RS00310 0.12 +1.7
62,997 + LU632_RS00310 0.14 -0.8
63,004 + LU632_RS00310 0.14 +0.2
63,052 + LU632_RS00310 0.17 +2.8
63,053 - LU632_RS00310 0.18 -1.0
63,063 + LU632_RS00310 0.18 +0.4
63,066 - LU632_RS00310 0.18 -0.4
63,069 + LU632_RS00310 0.19 -1.1
63,069 + LU632_RS00310 0.19 -0.5
63,069 + LU632_RS00310 0.19 -0.8
63,069 + LU632_RS00310 0.19 +0.1
63,070 - LU632_RS00310 0.19 -0.4
63,070 - LU632_RS00310 0.19 -0.4
63,297 + LU632_RS00310 0.34 +1.5
63,297 + LU632_RS00310 0.34 -1.1
63,297 + LU632_RS00310 0.34 -2.1
63,298 - LU632_RS00310 0.34 -3.0
63,298 - LU632_RS00310 0.34 +0.1
63,353 - LU632_RS00310 0.38 +0.1
63,425 + LU632_RS00310 0.43 -0.7
63,464 + LU632_RS00310 0.46 -3.2
63,758 + LU632_RS00310 0.66 -0.4
63,807 + LU632_RS00310 0.69 +0.9
63,808 - LU632_RS00310 0.69 -3.4
63,963 + LU632_RS00310 0.80 +2.3
63,963 + LU632_RS00310 0.80 +1.3
64,227 + -1.6
64,227 + -0.8
64,227 + +0.8
64,228 - +0.3
64,228 - +4.0
64,228 - +0.2
64,228 - +0.9
64,255 + +1.2
64,301 - +0.9
64,375 - +1.8
64,435 + +0.2
64,436 - +2.4
64,536 + +0.4
64,537 - -0.8
64,537 - -1.8
64,537 - +1.3
64,537 - -0.7
64,537 - -1.6
64,538 + +0.2
64,538 + -0.1
64,539 - -0.9
64,609 - +2.3
64,667 + +0.6
64,669 + +0.5
64,673 - +0.8
64,673 - +1.2
64,787 + LU632_RS00315 0.13 +1.4
64,788 - LU632_RS00315 0.14 +0.4
64,800 - LU632_RS00315 0.15 +0.6
64,956 + LU632_RS00315 0.32 -0.8
65,148 - LU632_RS00315 0.54 -0.8

Or see this region's nucleotide sequence