Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00115

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00105 and LU632_RS00110 are separated by 46 nucleotidesLU632_RS00110 and LU632_RS00115 are separated by 107 nucleotidesLU632_RS00115 and LU632_RS00120 are separated by 48 nucleotidesLU632_RS00120 and sodA are separated by 135 nucleotides LU632_RS00105: LU632_RS00105 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,353 to 21,589 _RS00105 LU632_RS00110: LU632_RS00110 - hypothetical protein, at 21,636 to 22,070 _RS00110 LU632_RS00115: LU632_RS00115 - acyltransferase, at 22,178 to 23,233 _RS00115 LU632_RS00120: LU632_RS00120 - IS5/IS1182 family transposase, at 23,282 to 23,383 _RS00120 LU632_RS00125: sodA - superoxide dismutase [Mn], at 23,519 to 24,136 sodA Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 21.194 kb on - strand, within LU632_RS00105at 21.194 kb on - strand, within LU632_RS00105at 21.209 kb on - strand, within LU632_RS00105at 21.333 kb on - strand, within LU632_RS00105at 21.333 kb on - strand, within LU632_RS00105at 21.434 kb on - strand, within LU632_RS00105at 21.495 kb on + strandat 21.496 kb on - strandat 21.583 kb on - strandat 21.742 kb on - strand, within LU632_RS00110at 21.742 kb on - strand, within LU632_RS00110at 21.777 kb on + strand, within LU632_RS00110at 21.777 kb on + strand, within LU632_RS00110at 21.778 kb on - strand, within LU632_RS00110at 21.929 kb on + strand, within LU632_RS00110at 21.952 kb on - strand, within LU632_RS00110at 21.999 kb on + strand, within LU632_RS00110at 22.000 kb on - strand, within LU632_RS00110at 22.000 kb on - strand, within LU632_RS00110at 22.003 kb on - strand, within LU632_RS00110at 22.003 kb on - strand, within LU632_RS00110at 22.098 kb on - strandat 22.146 kb on + strandat 22.146 kb on + strandat 22.149 kb on - strandat 22.151 kb on + strandat 22.151 kb on + strandat 22.151 kb on + strandat 22.320 kb on - strand, within LU632_RS00115at 22.460 kb on + strand, within LU632_RS00115at 22.460 kb on + strand, within LU632_RS00115at 22.460 kb on + strand, within LU632_RS00115at 22.610 kb on + strand, within LU632_RS00115at 22.611 kb on - strand, within LU632_RS00115at 22.650 kb on - strand, within LU632_RS00115at 22.650 kb on - strand, within LU632_RS00115at 22.670 kb on + strand, within LU632_RS00115at 22.670 kb on + strand, within LU632_RS00115at 22.796 kb on - strand, within LU632_RS00115at 22.814 kb on + strand, within LU632_RS00115at 22.815 kb on - strand, within LU632_RS00115at 22.965 kb on - strand, within LU632_RS00115at 23.029 kb on + strand, within LU632_RS00115at 23.029 kb on + strand, within LU632_RS00115at 23.037 kb on - strand, within LU632_RS00115at 23.037 kb on - strand, within LU632_RS00115at 23.041 kb on - strand, within LU632_RS00115at 23.089 kb on + strand, within LU632_RS00115at 23.093 kb on - strand, within LU632_RS00115at 23.102 kb on + strand, within LU632_RS00115at 23.102 kb on + strand, within LU632_RS00115at 23.103 kb on - strand, within LU632_RS00115at 23.144 kb on + strandat 23.273 kb on - strandat 23.285 kb on - strandat 23.374 kb on + strandat 23.446 kb on + strandat 23.455 kb on - strandat 23.455 kb on - strandat 23.468 kb on + strandat 23.472 kb on + strandat 23.472 kb on + strandat 24.134 kb on + strandat 24.135 kb on - strandat 24.135 kb on - strandat 24.138 kb on + strandat 24.139 kb on - strandat 24.207 kb on + strandat 24.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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21,194 - LU632_RS00105 0.68 +1.0
21,194 - LU632_RS00105 0.68 +1.4
21,209 - LU632_RS00105 0.69 -1.4
21,333 - LU632_RS00105 0.79 +0.3
21,333 - LU632_RS00105 0.79 +0.8
21,434 - LU632_RS00105 0.87 +0.1
21,495 + -0.5
21,496 - +0.7
21,583 - -1.6
21,742 - LU632_RS00110 0.24 -0.4
21,742 - LU632_RS00110 0.24 -0.8
21,777 + LU632_RS00110 0.32 -1.1
21,777 + LU632_RS00110 0.32 +0.4
21,778 - LU632_RS00110 0.33 +0.1
21,929 + LU632_RS00110 0.67 -0.1
21,952 - LU632_RS00110 0.73 -0.4
21,999 + LU632_RS00110 0.83 -1.0
22,000 - LU632_RS00110 0.84 -3.0
22,000 - LU632_RS00110 0.84 +3.8
22,003 - LU632_RS00110 0.84 -0.8
22,003 - LU632_RS00110 0.84 +1.1
22,098 - +2.9
22,146 + +0.5
22,146 + +0.2
22,149 - +3.3
22,151 + -1.1
22,151 + +2.1
22,151 + +3.7
22,320 - LU632_RS00115 0.13 +3.0
22,460 + LU632_RS00115 0.27 +1.8
22,460 + LU632_RS00115 0.27 +0.1
22,460 + LU632_RS00115 0.27 +4.9
22,610 + LU632_RS00115 0.41 +0.8
22,611 - LU632_RS00115 0.41 +2.4
22,650 - LU632_RS00115 0.45 +2.6
22,650 - LU632_RS00115 0.45 +3.0
22,670 + LU632_RS00115 0.47 +2.1
22,670 + LU632_RS00115 0.47 -2.4
22,796 - LU632_RS00115 0.59 +4.0
22,814 + LU632_RS00115 0.60 -2.0
22,815 - LU632_RS00115 0.60 +1.2
22,965 - LU632_RS00115 0.75 +3.4
23,029 + LU632_RS00115 0.81 +1.0
23,029 + LU632_RS00115 0.81 +1.7
23,037 - LU632_RS00115 0.81 +1.9
23,037 - LU632_RS00115 0.81 +2.2
23,041 - LU632_RS00115 0.82 +4.1
23,089 + LU632_RS00115 0.86 +1.7
23,093 - LU632_RS00115 0.87 +3.4
23,102 + LU632_RS00115 0.88 +3.2
23,102 + LU632_RS00115 0.88 +5.5
23,103 - LU632_RS00115 0.88 -0.9
23,144 + +3.4
23,273 - +0.6
23,285 - -0.1
23,374 + -0.7
23,446 + -1.6
23,455 - +0.7
23,455 - +0.6
23,468 + -0.6
23,472 + -1.4
23,472 + -0.4
24,134 + -2.4
24,135 - -1.8
24,135 - +0.5
24,138 + +1.2
24,139 - +1.8
24,207 + -0.1
24,208 - +2.0

Or see this region's nucleotide sequence